Glyma.04g159700

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Report for Sequence Feature Glyma.04g159700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	39586882
stop:	39589922
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g159700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G08900.1	AT	reversibly glycosylated polypeptide 3	JGI	N/A	IEA
GO:0009832	GO-bp	plant-type cell wall biogenesis	EnsemblGenomes	N/A	IEA
GO:0030244	GO-bp	cellulose biosynthetic process	EnsemblGenomes	N/A	IEA
GO:0030244	GO-bp	cellulose biosynthetic process	JGI	N/A	IEA
GO:0033356	GO-bp	UDP-L-arabinose metabolic process	EnsemblGenomes	N/A	IEA
GO:0071669	GO-bp	plant-type cell wall organization or biogenesis	EnsemblGenomes	N/A	IEA
GO:0005794	GO-cc	Golgi apparatus	EnsemblGenomes	N/A	IEA
GO:0005829	GO-cc	cytosol	EnsemblGenomes	N/A	IEA
GO:0016866	GO-mf	intramolecular transferase activity	EnsemblGenomes	N/A	IEA
GO:0016866	GO-mf	intramolecular transferase activity	JGI	N/A	IEA
GO:0052691	GO-mf	UDP-arabinopyranose mutase activity	EnsemblGenomes	N/A	IEA
PF03214	PFAM	Reversibly glycosylated polypeptide	JGI	N/A	IEA
GN7V-49615	SoyCyc9-rxn	UDP-arabinopyranose mutase	Plant Metabolic Network		ISS

Expression Patterns of Glyma.04g159700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g159700 not represented in the dataset	Glyma.04g159700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g159700

Paralog	Evidence	Comments
Glyma.06g205600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g159700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g32080	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g159700

Limit To All Plant Sequences

>Glyma.04g159700.2 sequence-type=transcript locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGTAACCGTTCCAGGGAGGTGAACGCACAATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAAATTCTTTATACATGCGGCTCTAAGGAGGGCAGAGGATATGCCTATAGCTATCATTTTGCCTTTTTTTTTTTCTTTTCATATAACAATAAAACTTGAGTGGCTCCTCAATATTTTTTATATTTTGTTCAGGTTGGAATGTAGCTTATTGTTAAACTTTGAAATTTGATAGTGAGATTGTTGCTCTTGGGAAAGGCTTCCCATGCATTCGATTTACCTTTACCGTGACTGTTGTTGTTGGTTCCATCTTAGTCATCATGTCATGTGGTTTAAATCTAAAACTTAA

Coding sequences of Glyma.04g159700

Limit To All Plant Sequences

>Glyma.04g159700.1 sequence-type=CDS polypeptide=Glyma.04g159700.1.p locus=Glyma.04g159700 ID=Glyma.04g159700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCGTCATCGGGAAGCACAGCAGCAGCAACGCCGATTCTGAAGGAGGAGGTGGACATAGTGATTCCCACGATACGTAACCTGGACTTCTTGGGGATGTGGAGGCCCTTCTTCGAGGGTTATCATTTGATAATAGTGCAGGACGGTGATCCTTCGAAGGTTATCAAGGTTCCTGAAGGGTTTGATTATGAACTCTACAACCGCAACGACATCAACCGCGTTCTTGGCCCCAGGGCACACTGCATCTCCTTCAAGGACTCTGCTTGCCGCTGCTTCGGCTTCTTGTTGTCTAAGAAAAAGTACATCTTCACCATCGACGATGACTGCTTCGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA

>Glyma.04g159700.2 sequence-type=CDS polypeptide=Glyma.04g159700.2.p locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA

Predicted protein sequences of Glyma.04g159700

Limit To All Plant Sequences

>Glyma.04g159700.1.p sequence-type=predicted peptide transcript=Glyma.04g159700.1 locus=Glyma.04g159700 ID=Glyma.04g159700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSSGSTAAATPILKEEVDIVIPTIRNLDFLGMWRPFFEGYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRVLGPRAHCISFKDSACRCFGFLLSKKKYIFTIDDDCFVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK*

>Glyma.04g159700.2.p sequence-type=predicted peptide transcript=Glyma.04g159700.2 locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK*

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