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A previous version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT3G08900.1 | AT | reversibly glycosylated polypeptide 3 | JGI | N/A | IEA |
GO:0009832 | GO-bp | plant-type cell wall biogenesis | EnsemblGenomes | N/A | IEA |
GO:0030244 | GO-bp | cellulose biosynthetic process | EnsemblGenomes | N/A | IEA |
GO:0030244 | GO-bp | cellulose biosynthetic process | JGI | N/A | IEA |
GO:0033356 | GO-bp | UDP-L-arabinose metabolic process | EnsemblGenomes | N/A | IEA |
GO:0071669 | GO-bp | plant-type cell wall organization or biogenesis | EnsemblGenomes | N/A | IEA |
GO:0005794 | GO-cc | Golgi apparatus | EnsemblGenomes | N/A | IEA |
GO:0005829 | GO-cc | cytosol | EnsemblGenomes | N/A | IEA |
GO:0016866 | GO-mf | intramolecular transferase activity | EnsemblGenomes | N/A | IEA |
GO:0016866 | GO-mf | intramolecular transferase activity | JGI | N/A | IEA |
GO:0052691 | GO-mf | UDP-arabinopyranose mutase activity | EnsemblGenomes | N/A | IEA |
PF03214 | PFAM | Reversibly glycosylated polypeptide | JGI | N/A | IEA |
GN7V-49615 | SoyCyc9-rxn | UDP-arabinopyranose mutase | Plant Metabolic Network | ISS |
Glyma.04g159700 not represented in the dataset |
Glyma.04g159700 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
Paralog | Evidence | Comments |
---|---|---|
Glyma.06g205600 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
Corresponding Name | Annotation Version | Evidence | Comments |
---|---|---|---|
Glyma04g32080 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g159700.2 sequence-type=transcript locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 AGTAACCGTTCCAGGGAGGTGAACGCACAATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAAATTCTTTATACATGCGGCTCTAAGGAGGGCAGAGGATATGCCTATAGCTATCATTTTGCCTTTTTTTTTTTCTTTTCATATAACAATAAAACTTGAGTGGCTCCTCAATATTTTTTATATTTTGTTCAGGTTGGAATGTAGCTTATTGTTAAACTTTGAAATTTGATAGTGAGATTGTTGCTCTTGGGAAAGGCTTCCCATGCATTCGATTTACCTTTACCGTGACTGTTGTTGTTGGTTCCATCTTAGTCATCATGTCATGTGGTTTAAATCTAAAACTTAA
>Glyma.04g159700.1 sequence-type=CDS polypeptide=Glyma.04g159700.1.p locus=Glyma.04g159700 ID=Glyma.04g159700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTCTTCGTCATCGGGAAGCACAGCAGCAGCAACGCCGATTCTGAAGGAGGAGGTGGACATAGTGATTCCCACGATACGTAACCTGGACTTCTTGGGGATGTGGAGGCCCTTCTTCGAGGGTTATCATTTGATAATAGTGCAGGACGGTGATCCTTCGAAGGTTATCAAGGTTCCTGAAGGGTTTGATTATGAACTCTACAACCGCAACGACATCAACCGCGTTCTTGGCCCCAGGGCACACTGCATCTCCTTCAAGGACTCTGCTTGCCGCTGCTTCGGCTTCTTGTTGTCTAAGAAAAAGTACATCTTCACCATCGACGATGACTGCTTCGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA >Glyma.04g159700.2 sequence-type=CDS polypeptide=Glyma.04g159700.2.p locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGAAAGTTGCAAAAGATCCATCCGGAAAAGAAATTAATGCCCTGGAGCAGCACCTTAAGAACCTTCTGAGTCCATCAACCCCATTTTTCTTCAACACCCTCTATGATCCATACAGAGAGGGTACAGATTTTGTCCGAGGATACCCTTTTAGTCTGCGTGAAGGTGTCCCTACAGCTGCTTCTCATGGCCTCTGGCTCAACATTCCTGATTATGATGCCCCAACTCAGCTTGTCAAGCCTCTAGAGAGAAACAATAGGTATGTGGATGCAGTTATGACTATCCCAAAGGGGACTCTCTTTCCCATGTGTGGTATGAATTTGGCATTCAACCGGGAATTGATTGGTCCTGCAATGTACTTTGGACTCATGGGTGAGGGTCAACCTATTGGACGCTATGATGACATGTGGGCAGGCTGGTGCGTCAAGGTGATAAGTGATCACCTAGGATTGGGGGTGAAGACAGGATTGCCTTACATCTGGCACAGCAAAGCTAGCAACCCATTTGTGAACCTCAAGAAGGAGTACAAAGGAATTTACTGGCAAGAAGAGCTGATCCCATTTTTCCAATCTGTTTCTTTTCCAAAGGAATGCACAACTGCTCAGAAATGCTACATTGAACTCTCCAAGCAAGTGAAGGCAAAACTTGGCAAGGTTGATGAGTATTTCAACAAGCTTGCAGATGCTATGGTCACATGGATTGAAGCTTGGGATGAACTAAACCTATCTGGGGTAAAATCTGAAGCATTGTCCAATGGTCCGGCAAAGTAA
>Glyma.04g159700.1.p sequence-type=predicted peptide transcript=Glyma.04g159700.1 locus=Glyma.04g159700 ID=Glyma.04g159700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MSSSSGSTAAATPILKEEVDIVIPTIRNLDFLGMWRPFFEGYHLIIVQDGDPSKVIKVPEGFDYELYNRNDINRVLGPRAHCISFKDSACRCFGFLLSKKKYIFTIDDDCFVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK* >Glyma.04g159700.2.p sequence-type=predicted peptide transcript=Glyma.04g159700.2 locus=Glyma.04g159700 ID=Glyma.04g159700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1 MKVAKDPSGKEINALEQHLKNLLSPSTPFFFNTLYDPYREGTDFVRGYPFSLREGVPTAASHGLWLNIPDYDAPTQLVKPLERNNRYVDAVMTIPKGTLFPMCGMNLAFNRELIGPAMYFGLMGEGQPIGRYDDMWAGWCVKVISDHLGLGVKTGLPYIWHSKASNPFVNLKKEYKGIYWQEELIPFFQSVSFPKECTTAQKCYIELSKQVKAKLGKVDEYFNKLADAMVTWIEAWDELNLSGVKSEALSNGPAK*
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||