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Report for Sequence Feature Glyma.04g154700

Feature Type:gene_model
Chromosome:Gm04
Start:35932441
stop:35934689
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g154700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G19570.1AT cytidine deaminase 1 JGI N/AIEA
GO:0009972GO-bp cytidine deamination EnsemblGenomesN/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0004126GO-mf cytidine deaminase activity EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
PTHR11644Panther CYTIDINE DEAMINASE JGI N/AIEA
PTHR11644:SF5Panther JGI N/AIEA
PF00383PFAM Cytidine and deoxycytidylate deaminase zinc-binding region JGI N/AIEA
PWY-6556SoyCyc9 pyrimidine ribonucleosides salvage II Plant Metabolic Network ISS
PWY-7193SoyCyc9 pyrimidine ribonucleosides salvage I Plant Metabolic Network ISS
PWY-7196SoyCyc9 superpathway of pyrimidine ribonucleosides salvage Plant Metabolic Network ISS
PWY-7199SoyCyc9 pyrimidine deoxyribonucleosides salvage Plant Metabolic Network ISS
GN7V-59444SoyCyc9-rxn cytidine deaminase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g154700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g154700 not represented in the dataset
Glyma.04g154700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g154700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g23996 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g154700
>Glyma.04g154700.1 sequence-type=CDS polypeptide=Glyma.04g154700.1.p locus=Glyma.04g154700 ID=Glyma.04g154700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAGGATGATGCCGCAACCACAACAATGATAGCAGCCGCAATAGCCGATGGAGTCACAATCGCCGAATCCCAATCAATCTCCAAACTCCTCCCTTCCCTCGTTTCCTCTGCTCAATCCCTCGCCTGTCCTTCCATCTCCAACTTTCCCGTCGCCGCCGTCGAACTCGGCACCTCCGGTCACATCTTCGTGGGCGTGAACATGGAGTTCCCAAGCCTCCCCTTCCACCACACCATCCACGCTGAACAGTTCCTCCTCACCAACATGGCCAACAACGTCGAGACCCACCTCGACTCCTTCGCCGTCTCCGCCGCCCCCTGCGGCCATTGCCGCCAGTTCCTTCAAGAACTCCGCGACGCCCCTGACATCCAAATCCTCATCACCTCCCATAAAAACCCTCACTTCAGCCCTCTCTCCCACTTCCTCTTCCACCACTTCGGCCCCCACGACCTTTTCCCCAAAACCGTCCCTCTCCTCTTGGAGCCTCGTCACAACGCTCTCTCTCTTCCCCAAAATGATCATTTCAACGTTCTTGCAAAAGAATTTGAAATTCTTTCATAA
Predicted protein sequences of Glyma.04g154700
>Glyma.04g154700.1.p sequence-type=predicted peptide transcript=Glyma.04g154700.1 locus=Glyma.04g154700 ID=Glyma.04g154700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQDDAATTTMIAAAIADGVTIAESQSISKLLPSLVSSAQSLACPSISNFPVAAVELGTSGHIFVGVNMEFPSLPFHHTIHAEQFLLTNMANNVETHLDSFAVSAAPCGHCRQFLQELRDAPDIQILITSHKNPHFSPLSHFLFHHFGPHDLFPKTVPLLLEPRHNALSLPQNDHFNVLAKEFEILS*






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