SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g149600

Feature Type:gene_model
Chromosome:Gm04
Start:32163072
stop:32169877
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g149600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G04870.2AT protein arginine methyltransferase 10 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006479GO-bp protein methylation EnsemblGenomesN/AIEA
GO:0006479GO-bp protein methylation JGI N/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0019919GO-bp peptidyl-arginine methylation, to asymmetrical-dimethyl arginine EnsemblGenomesN/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0034969GO-bp histone arginine methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005829GO-cc cytosol EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008276GO-mf protein methyltransferase activity JGI N/AIEA
GO:0008469GO-mf histone-arginine N-methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0035242GO-mf protein-arginine omega-N asymmetric methyltransferase activity EnsemblGenomesN/AIEA
KOG1499 KOG Protein arginine N-methyltransferase PRMT1 and related enzymes JGI N/AIEA
PTHR11006Panther PROTEIN ARGININE N-METHYLTRANSFERASE JGI N/AIEA
PTHR11006:SF34Panther JGI N/AIEA
PF05185PFAM PRMT5 arginine-N-methyltransferase JGI N/AIEA

Expression Patterns of Glyma.04g149600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g149600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g20850 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g149600
>Glyma.04g149600.2 sequence-type=transcript locus=Glyma.04g149600 ID=Glyma.04g149600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGCAAAGCAAAGGCCGCCCTTGCAGTGCCGCCAAAGCAACCCTGCCCTAAAAATTGAACAGGGCAGAGAGCGAGTGAACATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAGCAAACTGGATTTCAAATTCTGGGGACTGCAAGATACAAGGTATAATTATATATAATTACATAATGATATTATACAAGAGAAATGATATCTGTACAATAATTTGTACAACAAAATATACAACTAAGAAAGAGAAAGAGATAACAGAAAAAAATTGAATTTAAATTGTAATAAATGATAGGATTGAGGAGAGAGACACGCACAAAATATGATGTATAAATTGTATAAACTTGTTGTATGTGTATCATATCTCATTATATAGTGAGTCTTACTAACTAGTGTCCTTAGAACATTGGTTAAAGAATTAAAAGAGAAAAATATTTATTGTATAAATCAAAGGAGAACGTAAAAAAGACCATGAGCAGTGTAATTTTCCACCTCCC
Coding sequences of Glyma.04g149600
>Glyma.04g149600.1 sequence-type=CDS polypeptide=Glyma.04g149600.1.p locus=Glyma.04g149600 ID=Glyma.04g149600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAG

>Glyma.04g149600.2 sequence-type=CDS polypeptide=Glyma.04g149600.2.p locus=Glyma.04g149600 ID=Glyma.04g149600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAACCTCCGCGAACGCTGTCGCAGGTGGTCGTGGCGGCGCCCCTGTCCCCAAAGACGTCGACTACGCCAATTACTTCTGCACCTACGCTTTCCTCTACCACCAGAAGGAGATGCTCTCCGACCGCGTTCGCATGGACGCTTATTTCAACGCCATTTTTGAAAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCGGCACAGGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACCAAGATGTCGGAACACGCACGTGCACTCATCAAAGCGAATAATCTCCAGGACGTAGTTGAGGTCATCGAGGGATCGATGGAGGAAGTTACCTTGCCAGAGAGAGTTGATGTGATCATCTCTGAATGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATTGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTCGCATGTGGATGGCACCTATCCGGACTGGGATAGTAGATCACAAATTGGGTGATTATGAGTCGACTATGGATGATTGGCACAACTTTGTTGATGAAACAAAAACCTACTATGGTGTTGATATGGGCACTTTAACGAAACCTTTTTCAGAGGAGCAGAGGAAATATTATCTACAGACATCATTGTGGAACAGCCTTCATCCCCATCAAGTCATAGGAACTGCTGGTATAATAAAGGAAATTGATTGTTTAACTGCCACTGTGGCTGACATAGAGAAAGTTAGATCAAATTTTTCTATGTCAATAACCGTGGAAAACACAAAGTTATGTGGATTTGGAGGGTGGTTTGATGTACATTTTCGGGGAAGAAGTGAGGATCCAGCTGAACACGAGATTGAGTTAACTACAGCTCCCAGTGTAGATTATGGTACACACTGGGGCCAACAGGTTTTCCTCTTGCATCCTCCCATGCGTCTGAATGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGATGTGAGATTCATCAGCATTCTGGCAAGATACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAG
Predicted protein sequences of Glyma.04g149600
>Glyma.04g149600.1.p sequence-type=predicted peptide transcript=Glyma.04g149600.1 locus=Glyma.04g149600 ID=Glyma.04g149600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTSANAVAGGRGGAPVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPERVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGDYESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIKEIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPSVDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAPFKNKYYIE*

>Glyma.04g149600.2.p sequence-type=predicted peptide transcript=Glyma.04g149600.2 locus=Glyma.04g149600 ID=Glyma.04g149600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGTSANAVAGGRGGAPVPKDVDYANYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEEVTLPERVDVIISEWMGYFLLRESMFDSVIHARDCWLKPTGVMYPSHARMWMAPIRTGIVDHKLGDYESTMDDWHNFVDETKTYYGVDMGTLTKPFSEEQRKYYLQTSLWNSLHPHQVIGTAGIIKEIDCLTATVADIEKVRSNFSMSITVENTKLCGFGGWFDVHFRGRSEDPAEHEIELTTAPSVDYGTHWGQQVFLLHPPMRLNEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKILAPFKNKYYIE*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo