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Report for Sequence Feature Glyma.04g147700

Feature Type:gene_model
Chromosome:Gm04
Start:30179767
stop:30183807
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g147700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26670.1AT Plant haem oxygenase (decyclizing) family protein JGI N/AIEA
GO:0006788GO-bp heme oxidation EnsemblGenomesN/AIEA
GO:0006788GO-bp heme oxidation JGI N/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0004392GO-mf heme oxygenase (decyclizing) activity EnsemblGenomesN/AIEA
GO:0004392GO-mf heme oxygenase (decyclizing) activity JGI N/AIEA
KOG4480 KOG Heme oxygenase JGI N/AIEA
PTHR10720Panther HEME OXYGENASE JGI N/AIEA
PF01126PFAM Heme oxygenase JGI N/AIEA
PWY-5874SoyCyc9 heme degradation I Plant Metabolic Network ISS
GN7V-64772SoyCyc9-rxn heme oxygenase Plant Metabolic Network ISS

Proteins Associated with Glyma.04g147700
LocusGene SymbolProtein Name
HO1 heme oxygenase 1, chloroplastic

Expression Patterns of Glyma.04g147700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g147700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g19030 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g147700
>Glyma.04g147700.2 sequence-type=transcript locus=Glyma.04g147700 ID=Glyma.04g147700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCTGACGACAAGAGAAAATAAAAAACCGCATCTGTTCCGTGTAAGGAGAAGTCACAAAATTTCTCAGCTCCTGCCTGTATACTTCACATGGCCTAATCCCACAGTCGCACACTCTTCCACCCTGCCATCACCAATCATCAACACAACGCCCATTATTATTTAAAAATCCTTAATATATTATTATTCTTCGTCCATCGCTTTTTCTTGAAGACTACTTCATCCTTCTTATTAGTTTCTTTTTATTTCAATCTTTCTCACTCGCACGCACGCACGCACAGTCTCTAGTGGTACCGTGCCGGTTCATTTGCTTCATCCACCACCTCATTTTCAGAGATTTCGTGCACTCAACAAACTCTCATCCACCCATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAAAGAGGTTAAATTATGTTGTGTGTCACATTGTTTATGAGTACATCTTTGGTTTTGAGTGCTATTTGTGGGCCAGAATATCTGTTTTATGTTTTATAATTACAGACACATTCATATCTGGGGATATTTTCATTTTTCCTCTTCATATGGCATAGTTACTATACTACTCCCTCTGAACTCATA
Coding sequences of Glyma.04g147700
>Glyma.04g147700.1 sequence-type=CDS polypeptide=Glyma.04g147700.1.p locus=Glyma.04g147700 ID=Glyma.04g147700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTTGCTGAAAAGTTACTTAACAACAAGGCGTTGGAGTTCTACAAATGGGATGATGACCTTCCACGATTGTTGCAGAATGTGAGAGACAAGTTGAATAAAGTTGCTGAACCTTGGAGTCGGGAAGAAAAGGACCACTGTCTGGAAGAAACAGAAAAATCATTCAAGCTCTCTGGAGAGATTCTCCGTTTGATTTTATCATGA

>Glyma.04g147700.2 sequence-type=CDS polypeptide=Glyma.04g147700.2.p locus=Glyma.04g147700 ID=Glyma.04g147700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGTCATCACTATCAACAATAGCTCTATTCCTGCCCCAATCGCTCTATATTAAGCCCCGCCTGGCGCCACGGCCTCTTCCTCCCCCTCAATTCCGCTCCCTTTTCCTAACCTCACCGGCGGGTGCTCGTACTGCTACTGTCATGCCTAGAAGGGCGGCGGTCATCGTGTCGGCGGCGACGGCGGAGACGCCGAAGAAGAAGGGCGAATCGAAAGGGTTCGTGGAAGAGATGAGGTTCGTGGCGATGAGGCTGCACACGAGGGACCAGGCCAGGGAGGGCGAGAAGGAGGTCAAGCAGCCCGAGGAGAAAGCCGTTACCAAGTGGGACCCATCCGTCGAAGGGTACCTGAAATTTCTTGTGGACAGTAAGCTCGTTTATGACACGCTGGAGAAAATCGTTCAAGAGGCTCCTCATCCTTCTTATGCTGAATTCAGAAACACTGGATTGGAAAGGTCTGCAAGTTTGGCAGAAGATTTGGAGTGGTTCAAGGAGCAAGGTTATACCATTCCTGAACCTTCTTCTCCTGGTCTTACCTATGCACAATATCTTAAGGAGTTATCTGTGAAGGATCCCCAAGCATTCATTTGCCATTTTTACAATATCTACTTTGCTCATTCAGCTGGTGGTCGAATGATTGGGAAAAAGGTAACCAAACACATGCATGCTTAA
Predicted protein sequences of Glyma.04g147700
>Glyma.04g147700.1.p sequence-type=predicted peptide transcript=Glyma.04g147700.1 locus=Glyma.04g147700 ID=Glyma.04g147700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVAEKLLNNKALEFYKWDDDLPRLLQNVRDKLNKVAEPWSREEKDHCLEETEKSFKLSGEILRLILS*

>Glyma.04g147700.2.p sequence-type=predicted peptide transcript=Glyma.04g147700.2 locus=Glyma.04g147700 ID=Glyma.04g147700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MASSLSTIALFLPQSLYIKPRLAPRPLPPPQFRSLFLTSPAGARTATVMPRRAAVIVSAATAETPKKKGESKGFVEEMRFVAMRLHTRDQAREGEKEVKQPEEKAVTKWDPSVEGYLKFLVDSKLVYDTLEKIVQEAPHPSYAEFRNTGLERSASLAEDLEWFKEQGYTIPEPSSPGLTYAQYLKELSVKDPQAFICHFYNIYFAHSAGGRMIGKKVTKHMHA*






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