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Report for Sequence Feature Glyma.04g140500

Feature Type:gene_model
Chromosome:Gm04
Start:23029956
stop:23030772
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g140500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G71790.1AT Subunits of heterodimeric actin filament capping protein Capz superfamily JGI N/AIEA
GO:0000902GO-bp cell morphogenesis EnsemblGenomesN/AIEA
GO:0030036GO-bp actin cytoskeleton organization JGI N/AIEA
GO:0051016GO-bp barbed-end actin filament capping EnsemblGenomesN/AIEA
GO:0005884GO-cc actin filament EnsemblGenomesN/AIEA
GO:0008290GO-cc F-actin capping protein complex EnsemblGenomesN/AIEA
GO:0008290GO-cc F-actin capping protein complex JGI N/AIEA
GO:0071203GO-cc WASH complex JGI N/AIEA
GO:0003779GO-mf actin binding JGI N/AIEA
GO:0051015GO-mf actin filament binding EnsemblGenomesN/AIEA
PTHR10619Panther F-ACTIN-CAPPING PROTEIN SUBUNIT BETA JGI N/AIEA
PF01115PFAM F-actin capping protein, beta subunit JGI N/AIEA

Expression Patterns of Glyma.04g140500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g140500 not represented in the dataset
Glyma.04g140500 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g140500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g27460 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g140500
>Glyma.04g140500.1 sequence-type=CDS polypeptide=Glyma.04g140500.1.p locus=Glyma.04g140500 ID=Glyma.04g140500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTAAAGATGGCTCAAAGACAGGGCAGGGTCGACGGGGATACTTAGAGGAAGGTGCATGGGATGCTATACATGTTATAGAGGTGGGACCAGAGGAAGAAGAAAACACCAATTATCAGTTAACCAGTACAGTTATGCTGACTCTGACTACAAATAATGTGTCATCAGGAACTTTCAATTTATCTGGATCAATTAGACGTCAGATGAATATGAAGCTATCAGTTGCTGATGGTCATCTTTGTAACATGGGAAGGATGATTGAGGAAATGGAGAGTAAGCTGAGGAACTCACTAGATCAGGTACTTCTTGATTATACAGGATTCAACTGCGTGCTTGTTGTATTTGAGATCAGCTTCTTTACTTTTTGTTCTTTGATGGGGAAGGGTTTGGGTATTTATCAAATTTGA
Predicted protein sequences of Glyma.04g140500
>Glyma.04g140500.1.p sequence-type=predicted peptide transcript=Glyma.04g140500.1 locus=Glyma.04g140500 ID=Glyma.04g140500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIKDGSKTGQGRRGYLEEGAWDAIHVIEVGPEEEENTNYQLTSTVMLTLTTNNVSSGTFNLSGSIRRQMNMKLSVADGHLCNMGRMIEEMESKLRNSLDQVLLDYTGFNCVLVVFEISFFTFCSLMGKGLGIYQI*






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