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Report for Sequence Feature Glyma.04g139900

Feature Type:gene_model
Chromosome:Gm04
Start:22700195
stop:22706297
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g139900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G63780.1AT Ribosomal RNA processing Brix domain protein JGI N/AIEA
GO:0006364GO-bp rRNA processing EnsemblGenomesN/AIEA
GO:0032040GO-cc small-subunit processome EnsemblGenomesN/AIEA
GO:0034457GO-cc Mpp10 complex EnsemblGenomesN/AIEA
GO:0030515GO-mf snoRNA binding EnsemblGenomesN/AIEA
GO:0042134GO-mf rRNA primary transcript binding EnsemblGenomesN/AIEA
KOG2781 KOG U3 small nucleolar ribonucleoprotein (snoRNP) component JGI N/AIEA
PTHR22734Panther U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4 JGI N/AIEA
PF04427PFAM Brix domain JGI N/AIEA

Expression Patterns of Glyma.04g139900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g139900 not represented in the dataset
Glyma.04g139900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g139900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g27730 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g139900
>Glyma.04g139900.2 sequence-type=transcript locus=Glyma.04g139900 ID=Glyma.04g139900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAAAACACAGGGGTTTTGCTCCAAGCTTACTTTCCTGTCTTCTCTTTTCTTTGCATCCTTGCTAATTTCATCTTCCCGCCGAGCTCCACACTCTTTTGACTTCGTTGTTCTTCCCTTATCTGTATTCAACAGAGTACGTCGAAAGGTTTCTTTTTGAAAATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGAATGGGAGCCCTAAATCTATAGAACTGAAGGAAATTGGTCCACGGTTTGAGTTACGGCTTTATCAGATAAAGTTGGGAACGGTGGATCAAGCTGAAGCTCAAATAGAATGGATCATCAGACCTTACATGAACACCACTAAAAAGCGGAAGTTCCTCAGTAATTGATGCAAGCATAGTGTTTGCGCAGCTAAACCATATGATCATACATTTTGAGGTGGCATTTCTCTGACTGTACTTCAAGGATGTGTTAAAGTTGATTAGGTTGATAAACAAGCTAAAATTTTTTGAATGAAAATTATGTTTTAGAATTTAATTTTATACTTGTGTGTTCTTATATCGTTACTGAGCTTGAAATTTCATTTTGGTAGTTGAATTCATTATATATTGACATATATCAACCCACCAAAGACAAAAAAGAAGACCTTCGTTATATTAAAGGACCAAGAATTTAAGATTCGCTCCCAGAAAAGCCCATTTTCGCAGTTGTTTTTACTTCAAACAAGATTATGTGCCCATCATTTTGAATCTCTGGCAATTTCGTACGTAAGAAAAAT
Coding sequences of Glyma.04g139900
>Glyma.04g139900.1 sequence-type=CDS polypeptide=Glyma.04g139900.1.p locus=Glyma.04g139900 ID=Glyma.04g139900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGGCATCATATTTATGAAAAGAATGGGAGCCCTAAATCTATAGAACTGAAGGAAATTGGTCCACGGTTTGAGTTACGGCTTTATCAGATAAAGTTGGGAACGGTGGATCAAGCTGAAGCTCAAATAGAATGGATCATCAGACCTTACATGAACACCACTAAAAAGCGGAAGTTCCTCAGTAATTGA

>Glyma.04g139900.2 sequence-type=CDS polypeptide=Glyma.04g139900.2.p locus=Glyma.04g139900 ID=Glyma.04g139900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCTGCGTAGAAACATCCGTTTGAGGAGAGAGTATTTGTACCGAAAGAGCTTAGAAGGCAAAGAACGTTTGCTCTACGAAAAGAAGCGCAAAATCAGAGAAGCTCTTCAAGAAGGGAAGCCCATACCCACTGAACTCAGAAACGAGGAAGCTGCTCTTCGCCGCGCAATCGACCTCGAAGATGAAAACACCGCTGTTCCGAGAACGCACATTGACGATGAGTATGCTTATGCTGCGGAAAAGGATCCTAAAATCTTGCTGACTACTTCCAGGGATCCGAGTGCTCCTCTTCAACAGTTTGTTAAGGAGTTGAGTTTTGTGTTTCCCAATGCACAGAGAATGAATCGGGGTGGTCAGGTTATCTCAGAGATCATAGAATCTTGTCGTGCACATGACTATACAGATGTTGTTTTGGTCCATGAACATCGTGGTGTGCCAGATGGTTTAATTGTTTGCCATCTACCATTTGGTCCAACTGCATATTTTGGATTACTCAACGTGGTTACAAGGCATGAAATTAAAGACAAGAAAGCCATTGGAACAATGCCTGAGGCTTATCCACATCTGATTCTCAATAATTTCTCAACTAAGTTAGGTGACAGAACCGCAAACATTATGAAGCATCTTTTTCCAGTGCCAAAACTAGACACAAAACGTATTGTCATGTTTGCCAACCAGTCTGACTATATCTCATTCAGAATGGGAGCCCTAAATCTATAG
Predicted protein sequences of Glyma.04g139900
>Glyma.04g139900.1.p sequence-type=predicted peptide transcript=Glyma.04g139900.1 locus=Glyma.04g139900 ID=Glyma.04g139900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRRAIDLEDENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFVFPNAQRMNRGGQVISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDKKAIGTMPEAYPHLILNNFSTKLGDRTANIMKHLFPVPKLDTKRIVMFANQSDYISFRHHIYEKNGSPKSIELKEIGPRFELRLYQIKLGTVDQAEAQIEWIIRPYMNTTKKRKFLSN*

>Glyma.04g139900.2.p sequence-type=predicted peptide transcript=Glyma.04g139900.2 locus=Glyma.04g139900 ID=Glyma.04g139900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MLRRNIRLRREYLYRKSLEGKERLLYEKKRKIREALQEGKPIPTELRNEEAALRRAIDLEDENTAVPRTHIDDEYAYAAEKDPKILLTTSRDPSAPLQQFVKELSFVFPNAQRMNRGGQVISEIIESCRAHDYTDVVLVHEHRGVPDGLIVCHLPFGPTAYFGLLNVVTRHEIKDKKAIGTMPEAYPHLILNNFSTKLGDRTANIMKHLFPVPKLDTKRIVMFANQSDYISFRMGALNL*






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