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Report for Sequence Feature Glyma.04g124800

Feature Type:gene_model
Chromosome:Gm04
Start:16368438
stop:16390781
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g124800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G13750.1AT zinc induced facilitator-like 1 JGI N/AIEA
GO:0055085GO-bp transmembrane transport EnsemblGenomesN/AIEA
GO:0055085GO-bp transmembrane transport JGI N/AIEA
GO:0071805GO-bp potassium ion transmembrane transport EnsemblGenomesN/AIEA
GO:0090333GO-bp regulation of stomatal closure EnsemblGenomesN/AIEA
GO:0005886GO-cc plasma membrane EnsemblGenomesN/AIEA
GO:0009705GO-cc plant-type vacuole membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0005215GO-mf transporter activity EnsemblGenomesN/AIEA
GO:0022821GO-mf potassium ion antiporter activity EnsemblGenomesN/AIEA
GO:0022857GO-mf transmembrane transporter activity JGI N/AIEA
KOG2615 KOG Permease of the major facilitator superfamily JGI N/AIEA
PTHR24003Panther MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN-RELATED JGI N/AIEA
PTHR24003:SF14Panther JGI N/AIEA
PF07690PFAM Major Facilitator Superfamily JGI N/AIEA

Expression Patterns of Glyma.04g124800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g124800
ParalogEvidenceComments
Glyma.06g313600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g124800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g14970 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g124800
>Glyma.04g124800.2 sequence-type=transcript locus=Glyma.04g124800 ID=Glyma.04g124800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TGTCTGGACTCACTAGGGCAAAACTGTTTTTGACTTTTACCCCTTGTACTAATATATATGTTATAATATATATGATTTGGGGTGGTTGGAGGAATCTTCATGAAACAAGAAGTGAGGTTGTCTTTCAAAGATGGAAGAGGAGACATTTGAAAAACCATTGTTGAAGAAAAACTATCATGAGAATTGTCCTGGTTGTAAGGTGGATCAAGCCAAGGAGCTCAAAAAGGATGTTTCCTTTAGAAATCTTTCTTATATATGGCTGGCGGTGTTATGTGGCACTTTGCCTGTAGCATCATTCTTTCCCTTTGTTTACTTCATGGTGAAGGATTTTAATATTGCTGAAACAGAGGAAGACATAAGTACCTATGCTGGATATGTGGGATCATCAATGATGCTTGGCAGGTCTTTGACATCCATATTGTGGGGTATGATTTCTGATCGCTATGGTAGAAAACCTGTTATCATTATAGGGATTATCACTGTTGTCATTTTCAACACATTATTTGGTCTTAGCACGAATCTTTGGATGGCTGTTAGCATGCGATTTCTTCTTGGATGTTTAAATGGTTTACTTGGACCAATAAAGGCTTATGCTACTGAAATTTTCAGAGAAGAGGAGCAGGCTCTTGGACTCTCAACAGTGGTTGCTGCTTGGGGAGTAGGTTTAGTCATTGGTCCAGCATTGGGAGGTTATTTGGCTCAGCCGGTGTTGAAATACCCACATATATTTCCAAAGGGTTCCTTTTGGGATAGGTTTCCATATTTCTTGCCGTGCTTCATAATATCAgcttttgcgtttgcatcagcaattgcttgcatttgGCTTCCAGAGACTCTTCACAACCACAAAGATAGCATTGAGTCCACTAAAAATGTTGAAGCTTTGGAAGTTGGAAGCAGTGAGGCAGACAAAGACAGAATGATCCAAAGAGATAAAAGCATCTTCCGAAATTGGCCCTTAATGTCATCTATCATTGTTTACTGTATTTTTTCACTACATGATGTTGCTTACCAGGAGGTTTTCTCATTGTGGGCTTTGAGTCCTTTAAGGTTGGGTGGTCTGAACTTTACAACTGATAATGTTGGTAATGTTCTTGCAATATCAGGTGTTGCTATTCTAATCTTCCAGCTTACACTGTACCGATCAGTTCAAAAAGCTTGTGGACCCATTAATCTAGTTCGCATAACAGGGGTGTTATCCATACCTCTCTTGCAATGTTTTCCCTTCATGACAATGTTGTCAGGCTTCACACTGGACATAGTGATCAATATTGCCTCCATTCTGAAGAATGTTATGATTGAGACAATTGCAACTAGTTTATTCCTTCTGCAAAATAAAGCTGTGAAACAACATCAAAGGGGAACAGCTAATAGTATCGCTATGACGGATTATCTTGGTCACAAAAGCATATAAATGATTTTTTCCTGCCAGGCACCCATATTGTCTTCCTTGCCCTGAATATTGTTGAAGGACTTGGAGTACTATTAATGTTCAAACCATTCTTGAGTGTAAAGAATTAAATACCATCAAAGAAATTACACTAATATCAATAAATTTTGTACAAGGGGTGAAGCATTTGTGTGCATTGGTTTTCAGATCGTAGCCACTATGGATGATGAAATAATGATACATGATTGTGTGTACTACATTTGCATCGTGTAAGTTTGAACATTGATTATTGAGATTTTAGAATGAGTGGGTGAATGTGTATTGCGTAGAGTTAATTAAACTTTGGACTGTTATGTTTCAATATATGTAATAGAGTTTTTATGTGTTGTTTAAAAACATTCATTAAAATTATGTGTATAGAATCCTATCTTgttagaaagtt
Coding sequences of Glyma.04g124800
>Glyma.04g124800.1 sequence-type=CDS polypeptide=Glyma.04g124800.1.p locus=Glyma.04g124800 ID=Glyma.04g124800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAGGAGACATTTGAAAAACCATTGTTGAAGAAAAACTATCATGAGAATTGTCCTGGTTGTAAGGTGGATCAAGCCAAGGAGCTCAAAAAGGATGTTTCCTTTAGAAATCTTTCTTATATATGGCTGGCGGTGTTATGTGGCACTTTGCCTGTAGCATCATTCTTTCCCTTTGTTTACTTCATGGTGAAGGATTTTAATATTGCTGAAACAGAGGAAGACATAAGTACCTATGCTGGATATGTGGGATCATCAATGATGCTTGGCAGGTCTTTGACATCCATATTGTGGGGTATGATTTCTGATCGCTATGGTAGAAAACCTGTTATCATTATAGGGATTATCACTGTTGTCATTTTCAACACATTATTTGGTCTTAGCACGAATCTTTGGATGGCTGTTAGCATGCGATTTCTTCTTGGATGTTTAAATGGTTTACTTGGACCAATAAAGGCTTATGCTACTGAAATTTTCAGAGAAGAGGAGCAGGCTCTTGGACTCTCAACAGTGGTTGCTGCTTGGGGAGTAGGTTTAGTCATTGGTCCAGCATTGGGAGGTTATTTGGCTCAGCCGGTGTTGAAATACCCACATATATTTCCAAAGGGTTCCTTTTGGGATAGGTTTCCATATTTCTTGCCGTGCTTCATAATATCAGCTTTTGCGTTTGCATCAGCAATTGCTTGCATTTGGCTTCCAGAGACTCTTCACAACCACAAAGATAGCATTGAGTCCACTAAAAATGTTGAAGCTTTGGAAGTTGGAAGCAGTGAGGCAGACAAAGACAGAATGATCCAAAGAGATAAAAGCATCTTCCGAAATTGGCCCTTAATGTCATCTATCATTGTTTACTGTATTTTTTCACTACATGATGTTGCTTACCAGGAGGTTTTCTCATTGTGGGCTTTGAGTCCTTTAAGGTTGGGTGGTCTGAACTTTACAACTGATAATGTTGGTAATGTTCTTGCAATATCAGGTGTTGCTATTCTAATCTTCCAGCTTACACTGTACCGATCAGTTCAAAAAGCTTGTGGACCCATTAATCTAGTTCGCATAACAGGGGTGTTATCCATACCTCTCTTGCAATGTTTTCCCTTCATGACAATGTTGTCAGGCTTCACACTGGACATAGTGATCAATATTGCCTCCATTCTGAAGAATGTTATGATTGAGACAATTGCAACTAGTTTATTCCTTCTGCAAAATAAAGCTGTGAAACAACATCAAAGGGGAACAGCTAATAGTATCGCTATGACGGGTATGTCAATATTCAAAACAATCGGTCCTGCTAGTGCCGGTGCATTATTATCTTGGTCACAAAAGCATATAAATGATTTTTTCCTGCCAGGCACCCATATTGTCTTCCTTGCCCTGAATATTGTTGAAGGACTTGGAGTACTATTAATGTTCAAACCATTCTTGAGTGTAAAGAATTAA

>Glyma.04g124800.2 sequence-type=CDS polypeptide=Glyma.04g124800.2.p locus=Glyma.04g124800 ID=Glyma.04g124800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGAGGAGACATTTGAAAAACCATTGTTGAAGAAAAACTATCATGAGAATTGTCCTGGTTGTAAGGTGGATCAAGCCAAGGAGCTCAAAAAGGATGTTTCCTTTAGAAATCTTTCTTATATATGGCTGGCGGTGTTATGTGGCACTTTGCCTGTAGCATCATTCTTTCCCTTTGTTTACTTCATGGTGAAGGATTTTAATATTGCTGAAACAGAGGAAGACATAAGTACCTATGCTGGATATGTGGGATCATCAATGATGCTTGGCAGGTCTTTGACATCCATATTGTGGGGTATGATTTCTGATCGCTATGGTAGAAAACCTGTTATCATTATAGGGATTATCACTGTTGTCATTTTCAACACATTATTTGGTCTTAGCACGAATCTTTGGATGGCTGTTAGCATGCGATTTCTTCTTGGATGTTTAAATGGTTTACTTGGACCAATAAAGGCTTATGCTACTGAAATTTTCAGAGAAGAGGAGCAGGCTCTTGGACTCTCAACAGTGGTTGCTGCTTGGGGAGTAGGTTTAGTCATTGGTCCAGCATTGGGAGGTTATTTGGCTCAGCCGGTGTTGAAATACCCACATATATTTCCAAAGGGTTCCTTTTGGGATAGGTTTCCATATTTCTTGCCGTGCTTCATAATATCAGCTTTTGCGTTTGCATCAGCAATTGCTTGCATTTGGCTTCCAGAGACTCTTCACAACCACAAAGATAGCATTGAGTCCACTAAAAATGTTGAAGCTTTGGAAGTTGGAAGCAGTGAGGCAGACAAAGACAGAATGATCCAAAGAGATAAAAGCATCTTCCGAAATTGGCCCTTAATGTCATCTATCATTGTTTACTGTATTTTTTCACTACATGATGTTGCTTACCAGGAGGTTTTCTCATTGTGGGCTTTGAGTCCTTTAAGGTTGGGTGGTCTGAACTTTACAACTGATAATGTTGGTAATGTTCTTGCAATATCAGGTGTTGCTATTCTAATCTTCCAGCTTACACTGTACCGATCAGTTCAAAAAGCTTGTGGACCCATTAATCTAGTTCGCATAACAGGGGTGTTATCCATACCTCTCTTGCAATGTTTTCCCTTCATGACAATGTTGTCAGGCTTCACACTGGACATAGTGATCAATATTGCCTCCATTCTGAAGAATGTTATGATTGAGACAATTGCAACTAGTTTATTCCTTCTGCAAAATAAAGCTGTGAAACAACATCAAAGGGGAACAGCTAATAGTATCGCTATGACGGATTATCTTGGTCACAAAAGCATATAA
Predicted protein sequences of Glyma.04g124800
>Glyma.04g124800.1.p sequence-type=predicted peptide transcript=Glyma.04g124800.1 locus=Glyma.04g124800 ID=Glyma.04g124800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEETFEKPLLKKNYHENCPGCKVDQAKELKKDVSFRNLSYIWLAVLCGTLPVASFFPFVYFMVKDFNIAETEEDISTYAGYVGSSMMLGRSLTSILWGMISDRYGRKPVIIIGIITVVIFNTLFGLSTNLWMAVSMRFLLGCLNGLLGPIKAYATEIFREEEQALGLSTVVAAWGVGLVIGPALGGYLAQPVLKYPHIFPKGSFWDRFPYFLPCFIISAFAFASAIACIWLPETLHNHKDSIESTKNVEALEVGSSEADKDRMIQRDKSIFRNWPLMSSIIVYCIFSLHDVAYQEVFSLWALSPLRLGGLNFTTDNVGNVLAISGVAILIFQLTLYRSVQKACGPINLVRITGVLSIPLLQCFPFMTMLSGFTLDIVINIASILKNVMIETIATSLFLLQNKAVKQHQRGTANSIAMTGMSIFKTIGPASAGALLSWSQKHINDFFLPGTHIVFLALNIVEGLGVLLMFKPFLSVKN*

>Glyma.04g124800.2.p sequence-type=predicted peptide transcript=Glyma.04g124800.2 locus=Glyma.04g124800 ID=Glyma.04g124800.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEETFEKPLLKKNYHENCPGCKVDQAKELKKDVSFRNLSYIWLAVLCGTLPVASFFPFVYFMVKDFNIAETEEDISTYAGYVGSSMMLGRSLTSILWGMISDRYGRKPVIIIGIITVVIFNTLFGLSTNLWMAVSMRFLLGCLNGLLGPIKAYATEIFREEEQALGLSTVVAAWGVGLVIGPALGGYLAQPVLKYPHIFPKGSFWDRFPYFLPCFIISAFAFASAIACIWLPETLHNHKDSIESTKNVEALEVGSSEADKDRMIQRDKSIFRNWPLMSSIIVYCIFSLHDVAYQEVFSLWALSPLRLGGLNFTTDNVGNVLAISGVAILIFQLTLYRSVQKACGPINLVRITGVLSIPLLQCFPFMTMLSGFTLDIVINIASILKNVMIETIATSLFLLQNKAVKQHQRGTANSIAMTDYLGHKSI*






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