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Report for Sequence Feature Glyma.04g112600

Feature Type:gene_model
Chromosome:Gm04
Start:12610633
stop:12620549
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g112600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G56180.1AT actin-related protein 8 JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0676 KOG Actin and related proteins JGI N/AIEA
PTHR11937Panther ACTIN JGI N/AIEA
PTHR11937:SF18Panther JGI N/AIEA
PF00022PFAM Actin JGI N/AIEA
PF00646PFAM F-box domain JGI N/AIEA

Expression Patterns of Glyma.04g112600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g112600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g12490 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g112600
>Glyma.04g112600.2 sequence-type=transcript locus=Glyma.04g112600 ID=Glyma.04g112600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AGGATTCAAACAGAACAGAGAACATTGGGTGGTGTTGTGGCGTTTGGTGAGTTGAGTTCATTCTCAACATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATtcttcaacgtcagcatcagcatcagcatcatcttcatcatcatcatcaccaccaGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGATTGTTGTGATACAAAATTTATTTCCTCAATTATGCACCCTCATCCAAAGAGGCAACAACAGAAGATGTGAATTTTAGCAACTGCTTTTGTATGTATAAGTATATTATGATTTCCTTCTTGAAACGAAGCCTATAGTTAACATTCAGGTTGTTAAGAATAATGTAATAAGATTCAAGACTAAACCACAAGTGTGAAGAAACTGTTAATAATATAGTTGAAGAGCAAAACCACAACGTGAGAGGTTTTTTGTAATTAGAAAAATGCCTAGACATTGGAATAATGGAATCCATCTCTGGTTCTTCCATTCAATTTTATGAAATGAGATGGTCCTTTTAAGAATGCCATAAACTTCGAAGATGGCTTACTCTACGAAGTTTAATTTTTCACCTTGAGTTTGGTTATTAGGTCTTTTTTTTGTCTATAGTTGAGGATGACAATTTTTTAATGAACCGAAAACATTATGTCTGCAATGGTTTTACAACTGAACCAAGCAGCACTTCATGGTCACGCCCACCCGAGAAAAGGATCATCATCATTTTATATTTTATGCAATGGAAGGAACAGTAAAGT
Coding sequences of Glyma.04g112600
>Glyma.04g112600.1 sequence-type=CDS polypeptide=Glyma.04g112600.1.p locus=Glyma.04g112600 ID=Glyma.04g112600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATGTGAGTCATACTACCTGTGATACATACTCAAATTTAGTTTGCTGTATATGCATTCTATTTTGGGTAGTGATTATGGCACCGTTGAGAATTATCCACTCAGTGTCCACTCCTCTCACACGGTTTATACACGTGTAA

>Glyma.04g112600.2 sequence-type=CDS polypeptide=Glyma.04g112600.2.p locus=Glyma.04g112600 ID=Glyma.04g112600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATGCTGCTCAGGAAGGTGTGGGAAAGGGTGTTATGGAGATCTGATTCTTCAACGTCAGCATCAGCATCAGCATCATCTTCATCATCATCATCACCACCAGAAGTGGCATGTTCTGACATGGGCGAGTTGGAGCTGCTACCCAGTGACATCTTGATGCACATTCTGAGACTTTTGGGTCCAAAAGAGGCTGCAAAGTTGAGTGTGGTTTGCAAGGCTTTGAGATCCCTTGTGTCTGATAACAGACTTTGGATTCACTTTCTTCAGACCCATCAGGCTGAGCCCTCTGGGGATTCTGTCTTCTTTGCTGAGACCACCTTGAGCTATGGCTACCCTCTTCCGCCCTTTGCTGGCCATTGGCCCCAACTATCATTCAAGCATATTTATGGCCAGAGAGCACTGGTTCCTGGTTCTATTATCATCGATGGTGGTTCTGGCTATTGCAAATTTGGTTGGAGCAAATACGCATATCCATCAGGGCGTTCAGCAACATTTTTGGAATTTGGTAATATTGAGTCACCAATGTATACTAGGCTTCGACATTTTTTTGCAACTATTTATAACAGGATGCAGGTGAAACCGAATAAACAACCAGTTATTGTTTCTGTGCCAATATGCCATTATGATGATACCGAATCAGCCAAAGCATCTAGGCAACAGCTTAAAGAGGCAATTTACGCTTCCTTGTTTGACATGAATGTTCCTGCTGTTTGCGCCATCAACCAGGCCACTCTAGCTCTGTATGCTGCAAAACGAACTTCTGGAATAGTTGTTAATATAGGTTTTCAAGTCACGTCTATAGTTCCAATTTTAAACGGTAAAGTAATGCGCAAGGTGGGTGTGGAAGTTGTGGGGCTGGGAGCACTGAAACTTACAGGATTTCTTAGGGAGAAGATGCAACTGAATAATTTAAGTTTTCAATCTTTGTACACTGTTCGCACATTGAAAGAGAATCTATGCTATGTTGCACTTGATTATGAAGCTGAGCTATTGAAAGATACAAAAGCATCATTTGAAGCTGCTGGAGAAGGATGGTTTACCCTTTCAAAAGGGAGGTTTCAGACAGCAGAGATCCTATTCCAGCCACATCTTGCCGGAGTGCAAGCTATGGGTCTGCACCAAGCCATAGCTCTTTGTGTGGAACATTGCCATTCTGCAGATTTAGCATGTGACAGTGATTGGTACAAGACTATAGTCTTATCAGGGGGGACTGCATGCTTACCTGGTTTGGCTGAAAGGATAGAGAAGGAACTCCATGCCTTACTTCCTCCCTACGTGTCCAATGGAATTAGAGTCATACCTCCTCCATATGGTGCTGATACTCCATGGTTTGGAGCAAAGATTGTTGGCAATTTGAGCACCTTTCCTGGTCATTGGTGCGTCACAAAAAAGCAGTTCCGTCAGAAGCCTAGACTCAACCTCATATGGTGA
Predicted protein sequences of Glyma.04g112600
>Glyma.04g112600.1.p sequence-type=predicted peptide transcript=Glyma.04g112600.1 locus=Glyma.04g112600 ID=Glyma.04g112600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNVSHTTCDTYSNLVCCICILFWVVIMAPLRIIHSVSTPLTRFIHV*

>Glyma.04g112600.2.p sequence-type=predicted peptide transcript=Glyma.04g112600.2 locus=Glyma.04g112600 ID=Glyma.04g112600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSMLLRKVWERVLWRSDSSTSASASASSSSSSSPPEVACSDMGELELLPSDILMHILRLLGPKEAAKLSVVCKALRSLVSDNRLWIHFLQTHQAEPSGDSVFFAETTLSYGYPLPPFAGHWPQLSFKHIYGQRALVPGSIIIDGGSGYCKFGWSKYAYPSGRSATFLEFGNIESPMYTRLRHFFATIYNRMQVKPNKQPVIVSVPICHYDDTESAKASRQQLKEAIYASLFDMNVPAVCAINQATLALYAAKRTSGIVVNIGFQVTSIVPILNGKVMRKVGVEVVGLGALKLTGFLREKMQLNNLSFQSLYTVRTLKENLCYVALDYEAELLKDTKASFEAAGEGWFTLSKGRFQTAEILFQPHLAGVQAMGLHQAIALCVEHCHSADLACDSDWYKTIVLSGGTACLPGLAERIEKELHALLPPYVSNGIRVIPPPYGADTPWFGAKIVGNLSTFPGHWCVTKKQFRQKPRLNLIW*






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