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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G36310.1 | AT | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | JGI | N/A | IEA |
| GO:0002098 | GO-bp | tRNA wobble uridine modification | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0008152 | GO-bp | metabolic process | JGI | N/A | IEA |
| GO:0030488 | GO-bp | tRNA methylation | EnsemblGenomes | N/A | IEA |
| GO:0032259 | GO-bp | methylation | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0005634 | GO-cc | nucleus | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0000049 | GO-mf | tRNA binding | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008168 | GO-mf | methyltransferase activity | JGI | N/A | IEA |
| GO:0008198 | GO-mf | ferrous iron binding | EnsemblGenomes | N/A | IEA |
| GO:0016300 | GO-mf | tRNA (uracil) methyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0016706 | GO-mf | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors | EnsemblGenomes | N/A | IEA |
| KOG1331 | KOG | Predicted methyltransferase | JGI | N/A | IEA |
| PTHR13069 | Panther | UNCHARACTERIZED | JGI | N/A | IEA |
| PF08241 | PFAM | Methyltransferase domain | JGI | N/A | IEA |
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Glyma.04g107300 not represented in the dataset |
Glyma.04g107300 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g107100 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g12110 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g107300.1 sequence-type=CDS polypeptide=Glyma.04g107300.1.p locus=Glyma.04g107300 ID=Glyma.04g107300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTCACAGTGTTCTAAAAGCAAGTAGGTTCCTCAATCCACGTAGACAAACCCTTGGTTTGACTATTTCCGTTAGTGGTTGTGTTTATCGTTTAGCATTTAGTTCAATGAAAGAAATCAATTGTAAAGTGGATTCTAGTTCATGTACTCTTGCCCCCAATAGGGAACCCTGCATTACAGATTCCTTATCAGTCAGCGGGAATTGCACTACTTCATCTACGAGTGTAAAATCCACCCCTGAAATTGAAAAGAAGTATGTTCATCATGTATATGATGCTATTGCGCCGCATTTCAGTGCCACCCGGTTCGCCAAGTGGCCGAAGGTTGCAGCATTTTTGTCATCTTTGCCTTTGGGATCTCTTGTCTTTGATGCGGGATGTGGGAATGGGAAATACTTAGGTTTGAATCAGGATTGTTTTTTCATAGGATGTGATATAAGTCCTTCCTTGATTAAGATCTGCTTGGATAGAGAGCATGAAGTTCTGGTTGCAGATGCTGTGAATCTCCCTTACAGGACTGGTTTCGGCGATGTGGCAATATCTATAGCTGTGTTACATCATTTAAGCACTGAAAATAGAAGGAGAAAGGCAATAGAAGAATTGGTCAGAGTTGTTAAAAAGGGTGGCCTTGTTCTGATTACAGTTTGGGCTGTAGAGCAAGAGGATAGTAAGCTGATTACCAAATGGACACCACTGAATGAGAAGTATGTTGATGAGTGGGTAGGACCAGGAAGTCCTCGTACTCGGGCGCCTTCATCCTCATCATTGGAAAGTATCCCCGAAAGTGAGGTGAGTCGCTCTGGTGAGCACATGGAAGTTTGCAATGAGCCACATGTATCAAGAGATTTGGAGGAAGAAAAAAATATAAAGAATCAACAGGAATACTTTGTTCCCTGGCATTTACCTTATCATCGTGCTGAAATCAGTGGTGCTTCTGCTGAAGCTCTTGCTGCTGGTCTGGCAACGAAAGATGACAAAAAAGGTGCTGTGGTGTATAATCGATATTATCATGTTTTTAGTGAAGGCGAGCTTGAAAGTTTGACAACTGGAATAAACAATGCCAGAATTGTTGATCAGTTTTTTGATAAATCCAACTGGTGTATTATTCTTGAGAAGACAGTGTGA
>Glyma.04g107300.1.p sequence-type=predicted peptide transcript=Glyma.04g107300.1 locus=Glyma.04g107300 ID=Glyma.04g107300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MIHSVLKASRFLNPRRQTLGLTISVSGCVYRLAFSSMKEINCKVDSSSCTLAPNREPCITDSLSVSGNCTTSSTSVKSTPEIEKKYVHHVYDAIAPHFSATRFAKWPKVAAFLSSLPLGSLVFDAGCGNGKYLGLNQDCFFIGCDISPSLIKICLDREHEVLVADAVNLPYRTGFGDVAISIAVLHHLSTENRRRKAIEELVRVVKKGGLVLITVWAVEQEDSKLITKWTPLNEKYVDEWVGPGSPRTRAPSSSSLESIPESEVSRSGEHMEVCNEPHVSRDLEEEKNIKNQQEYFVPWHLPYHRAEISGASAEALAAGLATKDDKKGAVVYNRYYHVFSEGELESLTTGINNARIVDQFFDKSNWCIILEKTV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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