Glyma.04g096700

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Report for Sequence Feature Glyma.04g096700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	8743666
stop:	8747107
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g096700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07840.1	AT	Sas10/Utp3/C1D family	JGI	N/A	IEA
GO:0000462	GO-bp	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	EnsemblGenomes	N/A	IEA
GO:0005730	GO-cc	nucleolus	EnsemblGenomes	N/A	IEA
GO:0032040	GO-cc	small-subunit processome	EnsemblGenomes	N/A	IEA
KOG3117	KOG	Protein involved in rRNA processing	JGI	N/A	IEA
PTHR13237	Panther	SOMETHING ABOUT SILENCING PROTEIN 10-RELATED	JGI	N/A	IEA
PF04000	PFAM	Sas10/Utp3/C1D family	JGI	N/A	IEA

Expression Patterns of Glyma.04g096700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g096700

Paralog	Evidence	Comments
Glyma.06g098500	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g096700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g10420	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g096700

Limit To All Plant Sequences

>Glyma.04g096700.2 sequence-type=transcript locus=Glyma.04g096700 ID=Glyma.04g096700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTAGTTTTCCACTTTTCCTTTCATCCTTGAGACCTTGACACTTTCACTTTCTCGCATAACCCTTAAGGTGCCGCAGATACGGGCACAGCCTCCCTCCCTTGCGAGTCTTACACCGTCATAAGTCACGGTTGTCATCGGAGCTCTTGCGGTTGCTCCTCACAGTCACAGATTGTTAAAAATTGTGGTAAATCATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAAAGGAAGAAAATTTGGGTTTTGAGCTAAAGGGCTGAAATGCTCTCTGGAAAACAGACCACTTCATGCTGTTGTCGGAAGTAATGCTAGATTTAACGAAAACGACAGAGTTGGTGTTGGTGCTTTCCTCCGTGTTTGTTTGTAGATTTTAGTTACattattgtctttttatttatttatttacttattattattattattatAGGCTCGGGTGCTTAATTGGGTACGTGAATTTGAGATTTTCGCAGAGATGAAATGTGTTTTTTTTTTTGCTATTACAGATGTGCACCCATTTTTGCGATGCAAGTGGATTTTTTTAACCCACCTTTATATATTTAGGTGGAGTACAAATAGTATTAAACTTCATATTTAGTAGGATTACTGAATTAAGTTTACATTTGTCGTTTTCTTAGGGGTGAACATGTAGGCCACCGATTGGTTTTTCTGTACATGACCCAAGATATTCTCAAATTGGTGGTTCTC

Coding sequences of Glyma.04g096700

Limit To All Plant Sequences

>Glyma.04g096700.1 sequence-type=CDS polypeptide=Glyma.04g096700.1.p locus=Glyma.04g096700 ID=Glyma.04g096700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

>Glyma.04g096700.2 sequence-type=CDS polypeptide=Glyma.04g096700.2.p locus=Glyma.04g096700 ID=Glyma.04g096700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAAATATCGCGAACCACAACGATGATAGCAAACAAAAAGAAGCGCCTCAGCTGGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACCGTAAGGCATAAAATTCAATCTTTAACTGCCATGGTGAAAGAAGGTCTATATCCTACAGCAGATGGATTTAGTTACCTTGAAGTTAAAAATTTGTTGCTTCTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATACGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTGATGCAAGCTAGTGAAAATGCAATCAGAAGTGATATTCTAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGCATCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTCGCAGGCTGACAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAAATCTTCAAAGCATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATCTTAGGACATTGATGAATGATATGGAGGAAAGACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACACGCGTTCCTCTTACGAAACAGGAAAGGAAACGAGAAAAGTATTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGAAGATAAAACTGGAGAGCAAGTAGTGGGCTCTAGTAATGGTAGCAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

Predicted protein sequences of Glyma.04g096700

Limit To All Plant Sequences

>Glyma.04g096700.1.p sequence-type=predicted peptide transcript=Glyma.04g096700.1 locus=Glyma.04g096700 ID=Glyma.04g096700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENIANHNDDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLMQASENAIRSDILNKEPVASNKSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRKRKH*

>Glyma.04g096700.2.p sequence-type=predicted peptide transcript=Glyma.04g096700.2 locus=Glyma.04g096700 ID=Glyma.04g096700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MENIANHNDDSKQKEAPQLAALLKEMKEGLDTVRHKIQSLTAMVKEGLYPTADGFSYLEVKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLMQASENAIRSDILNKEPVASNKSEDASKYRPNPDMLVSKVDLTSQADNEYYQPVKFAPTSMDLEKSSKHERNALRREKEILKQAKQSDYLRTLMNDMEERPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFEDKTGEQVVGSSNGSRTNNRLKKRKRKH*

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