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Report for Sequence Feature Glyma.04g096200

Feature Type:gene_model
Chromosome:Gm04
Start:8627546
stop:8632713
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g096200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24470.1AT GATA-type zinc finger protein with TIFY domain JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0030154GO-bp cell differentiation EnsemblGenomesN/AIEA
GO:0045944GO-bp positive regulation of transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005667GO-cc transcription factor complex EnsemblGenomesN/AIEA
GO:0000977GO-mf RNA polymerase II regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0001085GO-mf RNA polymerase II transcription factor binding EnsemblGenomesN/AIEA
GO:0001228GO-mf transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding EnsemblGenomesN/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
GO:0003700GO-mf sequence-specific DNA binding transcription factor activity JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
GO:0008270GO-mf zinc ion binding JGI N/AIEA
GO:0043565GO-mf sequence-specific DNA binding EnsemblGenomesN/AIEA
GO:0043565GO-mf sequence-specific DNA binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
PF00320PFAM GATA zinc finger JGI N/AIEA
PF06200PFAM tify domain JGI N/AIEA
PF06203PFAM CCT motif JGI N/AIEA

Expression Patterns of Glyma.04g096200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g096200
ParalogEvidenceComments
Glyma.06g097900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g096200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g10330 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g096200
>Glyma.04g096200.1 sequence-type=CDS polypeptide=Glyma.04g096200.1.p locus=Glyma.04g096200 ID=Glyma.04g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCGGCTCCATCAACCAGATCGTCTCCGCCGAAGACACCGACGGCCCCGTCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGACGGCGCCGCCTCCGATCACCACATCCATTACAGTTCCCACACCATCGAAGAAGACGGCGCCGCCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGATGGTGCCGCTGTCGAAGACGTTTCCGCCGTTCCGGGCCCTGAAATCTCTATCGACAATTCTAGCCAGCTCACGCTCTCGTTTCGCGGCCAAGTCTATGTCTTCGATGCTGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGCTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCGAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACATCGAGCAGCGTCATTGAATAGGTTCCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGAAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCAGAAACCTTGTGCTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAAGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCTGGAACACTCTCTTACACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGCCTTGGACATTCGGAGTGGCATCCCTGCACAGCATAACAATCTTGTTAATGATAGCAAAGCTTTGGTATCTGATCGTTGA
Predicted protein sequences of Glyma.04g096200
>Glyma.04g096200.1.p sequence-type=predicted peptide transcript=Glyma.04g096200.1 locus=Glyma.04g096200 ID=Glyma.04g096200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFGSINQIVSAEDTDGPVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGAASDHHIHYSSHTIEDDGAAVEDVSAVPGPEISIDNSSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGNELTSGSQCAELSSRNQTGEEEYPAKCSLPHRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCCTHCGISSKSTPMMRKGPSGPRSLCNACGLFWANRGTLRDLSKRNLEHSLTPPEQVDEGSNNNALDIRSGIPAQHNNLVNDSKALVSDR*






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