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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24490.1 | AT | RAB geranylgeranyl transferase alpha subunit 1 | JGI | N/A | IEA |
| GO:0018342 | GO-bp | protein prenylation | EnsemblGenomes | N/A | IEA |
| GO:0018342 | GO-bp | protein prenylation | JGI | N/A | IEA |
| GO:0018344 | GO-bp | protein geranylgeranylation | EnsemblGenomes | N/A | IEA |
| GO:0005968 | GO-cc | Rab-protein geranylgeranyltransferase complex | EnsemblGenomes | N/A | IEA |
| GO:0004663 | GO-mf | Rab geranylgeranyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | EnsemblGenomes | N/A | IEA |
| GO:0008318 | GO-mf | protein prenyltransferase activity | EnsemblGenomes | N/A | IEA |
| GO:0008318 | GO-mf | protein prenyltransferase activity | JGI | N/A | IEA |
| KOG0529 | KOG | Protein geranylgeranyltransferase type II, alpha subunit | JGI | N/A | IEA |
| PTHR11129 | Panther | PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT | JGI | N/A | IEA |
| PTHR11129:SF2 | Panther | GERANYLGERANYL TRANSFERASE TYPE-2 SUBUNIT ALPHA | JGI | N/A | IEA |
| PF01239 | PFAM | Protein prenyltransferase alpha subunit repeat | JGI | N/A | IEA |
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Glyma.04g095800 not represented in the dataset |
Glyma.04g095800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g097500 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g10240 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g095800.1 sequence-type=CDS polypeptide=Glyma.04g095800.1.p locus=Glyma.04g095800 ID=Glyma.04g095800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGCACGGTCGGCCTCGCAAAGCGTTGAAGCAAGAAGATGAAGCCGCTTCAGCAGCCAAAGCTGAAAAGCTTCGTTCACTCCAAGCTCAGTTCCTCGCCAATCACCACAATCACATTTATAGCAAGGAAGCGTTAGATGTGAGCGCGAAGCTTCTAGAAGTGAATCCAGAGTGCTACACAGCTTGGAATTACAGAAAGCTCGCCGTTCAACATCTTCTCTCTAACTCCGATTCCGATCCTCACTCTATCTTCGATGACGAGCTCAAACTCGTGGAGATTGCGCTGAGGAAGAATTTCAAGTCTTACGGCGCGTGGCATCATAGAAAATGGGTACTCAGCAAGGGGCATTCGTCCATAGACAACGAAATGCGCCTTCTGAATGGTTTTCAGAAGATGGATCCTCGGAATTTTCACGCCTGGAATTACCGAAGGTTTGTTGCTGAACTGATGAAACGATCGGATGAGGATGAGTTGAAATACACAGAGGAAGTGATAGGGACTAATTTCAGTAATTACTCTGCTTGGCACAATCGTAGTGTGCTTTTGTCTAATTTGCTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAAGGGGAGTTTGAGCATGTCCACAATGCTATTTTTACCGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAAAACTGATGCTCCTCTACTTGTTTCGTCTTGGCCTTCACATGGATCTAATATAACTCTAATTGGGGACAACGACCTTCGTGGTTGTGGTTTGTCTCTGCTGAATGGTACACTATCAGACACTGAAACACTTCCAATCATTCTTTATTTCAATCAAGCTGTCGAAGGAATAAACTCATCCACAGTGGCTATTAAATCTGAACTTTTAAAGGAGGAACTTGTTTGGAAACCACTTTCAATGAAAATTTTAAATACTGCACAGGTTTGGGTTGTATATCTAAACCTTGGAAATATGGAGCTTCAACCATCAAAAACTTACTCTGTAGAGATCAATATTGGACATTCTAAGGGTGTTGTATCTTCAAATGGAAATCACTATGGTGATCCTTCCCAAATTTCCTTTGAAGTGTTTGTACAGACTGCCTCTACTGAACCTACTGAAGGACAGGGTGGGAAAAGGACTACATGGAAGGATACAAATTTCCAAAAAATTGATCATTTTCAGGAATCAGATTCCATTCTTCCTGCTGATCAAAATCCCCATATTCCGACAACTTCCAATTGGTGCACTGAGGAAATTGGTGAAGAAATAACTAAATTTCAGGACTTATTGTCCGAGTATGATTGTAAAATTGGAAAACTTACACTTGCTAGACTTTTGACTGCTCTTGACTTGTTATCATCTCAACATGATGGAAGAAAATCTAACACCGAAGAAGTTCTTCAACTTTACACGGATCTGATGAAGTTGGATCCAACACATTCTCTTTACTACAAAGACGAGCATAGTCTAATATCACTAAAGCGGATAACTTCAACTAGGGACTCTTTACTACCATACTGCCACTACTATAAAGATGCAACAGAAACAATCACTGGTTATTTTTGTCTAAAATTACAAAATCTATCATTATCACGGATGGGATCCATTGAGAATTTATTGTGGGTGCAAATGCTAGACCTTAGCCACAACGAACTTCAATCCATCGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAATCTGAGTCATAATAAATTTGGTAGTTTTACTGCTTTGGGGCCTGTGAGATTGCTTAAGTCACTTAAAGTGTTGAATATTTCATACAATGAGTTAGGCTCTCACTCGATTGACACCACGAGATACTTATGCTCTTCTCCTGTATCACATACTGAAGAATTTGCCTGGGACCGTTTTGAAATCCTCACTGGCAGCATTAATGCCACAAAATTTTGGGAAGCTTTCTTGATATTTGGAAGCTTGACATTGACAGAGTTAAACATAACAGGGAATGCAGTAGCTGATGAGAACTTCAGGTCATTTCTCGTTAAAGTTTTGCCAACACTCAGGTGGCTAGATGATGAAGAATTATCTTGA
>Glyma.04g095800.1.p sequence-type=predicted peptide transcript=Glyma.04g095800.1 locus=Glyma.04g095800 ID=Glyma.04g095800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MHGRPRKALKQEDEAASAAKAEKLRSLQAQFLANHHNHIYSKEALDVSAKLLEVNPECYTAWNYRKLAVQHLLSNSDSDPHSIFDDELKLVEIALRKNFKSYGAWHHRKWVLSKGHSSIDNEMRLLNGFQKMDPRNFHAWNYRRFVAELMKRSDEDELKYTEEVIGTNFSNYSAWHNRSVLLSNLLKRKAEGYFPKEKVLEGEFEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSNITLIGDNDLRGCGLSLLNGTLSDTETLPIILYFNQAVEGINSSTVAIKSELLKEELVWKPLSMKILNTAQVWVVYLNLGNMELQPSKTYSVEINIGHSKGVVSSNGNHYGDPSQISFEVFVQTASTEPTEGQGGKRTTWKDTNFQKIDHFQESDSILPADQNPHIPTTSNWCTEEIGEEITKFQDLLSEYDCKIGKLTLARLLTALDLLSSQHDGRKSNTEEVLQLYTDLMKLDPTHSLYYKDEHSLISLKRITSTRDSLLPYCHYYKDATETITGYFCLKLQNLSLSRMGSIENLLWVQMLDLSHNELQSIEGLEAMQLLSCLNLSHNKFGSFTALGPVRLLKSLKVLNISYNELGSHSIDTTRYLCSSPVSHTEEFAWDRFEILTGSINATKFWEAFLIFGSLTLTELNITGNAVADENFRSFLVKVLPTLRWLDDEELS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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