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Report for Sequence Feature Glyma.04g095700

Feature Type:gene_model
Chromosome:Gm04
Start:8521259
stop:8525328
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g095700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09700.1AT dsRNA-binding domain-like superfamily protein JGI N/AIEA
GO:0030422GO-bp production of siRNA involved in RNA interference EnsemblGenomesN/AIEA
GO:0031053GO-bp primary miRNA processing EnsemblGenomesN/AIEA
GO:0031054GO-bp pre-miRNA processing EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0003725GO-mf double-stranded RNA binding EnsemblGenomesN/AIEA
GO:0004525GO-mf ribonuclease III activity EnsemblGenomesN/AIEA
KOG3732 KOG Staufen and related double-stranded-RNA-binding proteins JGI N/AIEA
PTHR11207Panther RIBONUCLEASE III JGI N/AIEA
PF00035PFAM Double-stranded RNA binding motif JGI N/AIEA

Expression Patterns of Glyma.04g095700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g095700
ParalogEvidenceComments
Glyma.06g097400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g095700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g10230 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g095700
>Glyma.04g095700.1 sequence-type=CDS polypeptide=Glyma.04g095700.1.p locus=Glyma.04g095700 ID=Glyma.04g095700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCACTAACGAAGACTTCCAAAGTGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCGCAGAAGGCGGGGCTGCCCACGCCTGTCTATGAAACTATTAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAACGACGTTCGCTATGATTCTTTGCCTGGATTTTTCAACCGCAAGGCGGCAGAGCAGTCGGCCGCAGAAGTTGCTTTGGTGGAGTTGGTCAAATCTAATGCAGTTAATCAGTCCATCACTCAACCTGTTCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCAATGTATCAGTGCAAGAAGGATGAAACACCAGGTCGAGCATCAGTATTTTCATGTACGGTTGACATTGGGGGGATTCTATATATTGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCTGCTAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCTCATGCTTCCGAAAACCAGGTTGGCCATCCACAGTTGACCGTCCTTCCATGCAGAAAAAGGGCAACAAGTTCTGTTGCCATAGCTGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAGCGCGGTTTAAAAGGAAGTCTTCCAAGAGGAAACCCTCTAGAGATAAGATGGGCCAAATTCATACTGAAAACTTGGGCATTGGAGAAATTATCAATCATGAGGTAGAAACACATGCAAGTGTTAATGGTGAATCTGGCCTCCTTGAAAAGAAAACCGAAACATTCACTTCAGAAGCCACCAACAATTTTGAAAATGGAGTATCAGTTAACTATCAAGAGAAAGAAACATTGGCTGGGGAAAGTTCTTTTGCTGTGAATAGCCAGGAAGGGATTTTTGAAAATGGGAAGTCAACAGAATTATATTCCAAGGAGAACAATCTTGGGACTGTTGTTACAGAACTGTCTTCTGCGTCTAATGGAGGCATACCGGAACCAAGTGTGGAGGTGAACAAACAGCAATGCAATGGAGAAATGGTTTCTGACCATTGTGTTGTGGGGGATTAA
Predicted protein sequences of Glyma.04g095700
>Glyma.04g095700.1.p sequence-type=predicted peptide transcript=Glyma.04g095700.1 locus=Glyma.04g095700 ID=Glyma.04g095700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELVKSNAVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASHASENQVGHPQLTVLPCRKRATSSVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIGEIINHEVETHASVNGESGLLEKKTETFTSEATNNFENGVSVNYQEKETLAGESSFAVNSQEGIFENGKSTELYSKENNLGTVVTELSSASNGGIPEPSVEVNKQQCNGEMVSDHCVVGD*






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