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Report for Sequence Feature Glyma.04g094900

Feature Type:gene_model
Chromosome:Gm04
Start:8463930
stop:8465232
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g094900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G61700.1AT RNA polymerases N / 8 kDa subunit JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006351GO-bp transcription, DNA-templated JGI N/AIEA
GO:0006360GO-bp transcription by RNA polymerase I EnsemblGenomesN/AIEA
GO:0006366GO-bp transcription by RNA polymerase II EnsemblGenomesN/AIEA
GO:0006383GO-bp transcription by RNA polymerase III EnsemblGenomesN/AIEA
GO:0005665GO-cc DNA-directed RNA polymerase II, core complex EnsemblGenomesN/AIEA
GO:0005666GO-cc DNA-directed RNA polymerase III complex EnsemblGenomesN/AIEA
GO:0005736GO-cc DNA-directed RNA polymerase I complex EnsemblGenomesN/AIEA
GO:0001054GO-mf RNA polymerase I activity EnsemblGenomesN/AIEA
GO:0001055GO-mf RNA polymerase II activity EnsemblGenomesN/AIEA
GO:0001056GO-mf RNA polymerase III activity EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003677GO-mf DNA binding JGI N/AIEA
GO:0003899GO-mf DNA-directed 5'-3' RNA polymerase activity EnsemblGenomesN/AIEA
GO:0003899GO-mf DNA-directed RNA polymerase activity JGI N/AIEA
GO:0008270GO-mf zinc ion binding EnsemblGenomesN/AIEA
KOG3497 KOG DNA-directed RNA polymerase, subunit RPB10 JGI N/AIEA
PTHR23413Panther 60S RIBOSOMAL PROTEIN L32 AND DNA-DIRECTED RNA POLYMERASE II, SUBUNIT N JGI N/AIEA
PF01194PFAM RNA polymerases N / 8 kDa subunit JGI N/AIEA

Expression Patterns of Glyma.04g094900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g094900 not represented in the dataset
Glyma.04g094900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g094900
ParalogEvidenceComments
Glyma.06g096400 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g094900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g10140 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g094900
>Glyma.04g094900.2 sequence-type=transcript locus=Glyma.04g094900 ID=Glyma.04g094900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttttatgaatcaacttgatcggtaaagggaaaaagaagataagagaaattttaccatttttaaagaatgctagatgcaccagcaataatgctggatgtacctagcatcttagtaaGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTT

>Glyma.04g094900.3 sequence-type=transcript locus=Glyma.04g094900 ID=Glyma.04g094900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ttttatgaatcaacttgatcggtaaagggaaaaagaagataagagaaattttaccatttttaaagaatgctagatgcaccagcaataatgctggatgtacctagcatcttagtaaGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTT

>Glyma.04g094900.4 sequence-type=transcript locus=Glyma.04g094900 ID=Glyma.04g094900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
gatgcaccagcaataatgctggatgtacctagcatcttagtaaGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAGTGGAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTT

>Glyma.04g094900.5 sequence-type=transcript locus=Glyma.04g094900 ID=Glyma.04g094900.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
gatgcaccagcaataatgctggatgtacctagcatcttagtaaGCCATAAAATTCAAGTAGCCCAACCAACCCAAAGAGAGTAAAAACCTTCAAAACAGTTTTGTTCATGAAATAGCCTTTCCAGTCACCGGCGTTAGTTGATCAGAGTCACAGTCACTACGGCAAGCACATTATTAGAAAGGGCGTGGTTTTGTTGTGAGTACTGAGCAGAGAAGAGAAAAATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAAGAAGGCTTAAGGAATAACAGATGATGTTTCAGTTGCATTCCATGGCCTATGGCAATGTATCGATTTTTGTTTTCTTTTTTGAATTGCATTTTTACAAGCAGTTCATGTTTGTGTGCTGGTTCAGAGCAAGTATGTTTGTTATCGGTTCTTTAGAGGAGCTATGACAAGAGACAGTTTATGTTAATATCTCATACAATGGTATTATATGACAGACCAAACTTTAGAAGGATGCCACATGCAAACAAGTTAATTGGCACATAAAAATTCACGATTATTCCCCACTTTTGGTTTGTTGACCTTTCGTGTTTTATACTAATTTTTCCCAATTAATATACCATTTTCACATTTTT
Coding sequences of Glyma.04g094900
>Glyma.04g094900.1 sequence-type=CDS polypeptide=Glyma.04g094900.1.p locus=Glyma.04g094900 ID=Glyma.04g094900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma.04g094900.2 sequence-type=CDS polypeptide=Glyma.04g094900.2.p locus=Glyma.04g094900 ID=Glyma.04g094900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma.04g094900.3 sequence-type=CDS polypeptide=Glyma.04g094900.3.p locus=Glyma.04g094900 ID=Glyma.04g094900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma.04g094900.4 sequence-type=CDS polypeptide=Glyma.04g094900.4.p locus=Glyma.04g094900 ID=Glyma.04g094900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA

>Glyma.04g094900.5 sequence-type=CDS polypeptide=Glyma.04g094900.5.p locus=Glyma.04g094900 ID=Glyma.04g094900.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATCATCCCCGTTCGTTGTTTTACCTGTGGAAAGGTCATTGGAAACAAATGGGACACCTATTTGGACCTTCTCCAGGCAGATTACAGTGAAGGAGATGCACTGGATGCATTGGGATTGGTTCGATATTGTTGTAGGCGCATGCTTATGACCCATGTTGATCTCATTGAGAAGTTGCTCAATTACAACACTCTGGACAAGTCTGATCCCAATTAA
Predicted protein sequences of Glyma.04g094900
>Glyma.04g094900.1.p sequence-type=predicted peptide transcript=Glyma.04g094900.1 locus=Glyma.04g094900 ID=Glyma.04g094900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma.04g094900.2.p sequence-type=predicted peptide transcript=Glyma.04g094900.2 locus=Glyma.04g094900 ID=Glyma.04g094900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma.04g094900.3.p sequence-type=predicted peptide transcript=Glyma.04g094900.3 locus=Glyma.04g094900 ID=Glyma.04g094900.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma.04g094900.4.p sequence-type=predicted peptide transcript=Glyma.04g094900.4 locus=Glyma.04g094900 ID=Glyma.04g094900.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*

>Glyma.04g094900.5.p sequence-type=predicted peptide transcript=Glyma.04g094900.5 locus=Glyma.04g094900 ID=Glyma.04g094900.5.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIIPVRCFTCGKVIGNKWDTYLDLLQADYSEGDALDALGLVRYCCRRMLMTHVDLIEKLLNYNTLDKSDPN*






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