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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G49650.1 | AT | xylulose kinase-2 | JGI | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0005975 | GO-bp | carbohydrate metabolic process | JGI | N/A | IEA |
| GO:0005997 | GO-bp | xylulose metabolic process | EnsemblGenomes | N/A | IEA |
| GO:0046835 | GO-bp | carbohydrate phosphorylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0004856 | GO-mf | xylulokinase activity | EnsemblGenomes | N/A | IEA |
| GO:0016773 | GO-mf | phosphotransferase activity, alcohol group as acceptor | EnsemblGenomes | N/A | IEA |
| GO:0016773 | GO-mf | phosphotransferase activity, alcohol group as acceptor | JGI | N/A | IEA |
| KOG2531 | KOG | Sugar (pentulose and hexulose) kinases | JGI | N/A | IEA |
| PTHR10196 | Panther | SUGAR KINASE | JGI | N/A | IEA |
| PTHR10196:SF10 | Panther | FGGY CARBOHYDRATE KINASE DOMAIN-CONTAINING PROTEIN | JGI | N/A | IEA |
| PF00370 | PFAM | FGGY family of carbohydrate kinases, N-terminal domain | JGI | N/A | IEA |
| PF02782 | PFAM | FGGY family of carbohydrate kinases, C-terminal domain | JGI | N/A | IEA |
| LARABITOLUTIL-PWY | SoyCyc9 | xylitol degradation | Plant Metabolic Network | ISS | |
| XYLCAT-PWY | SoyCyc9 | xylose degradation I | Plant Metabolic Network | ISS | |
| GN7V-46589 | SoyCyc9-rxn | xylulokinase | Plant Metabolic Network | ISS |
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Glyma.04g088400 not represented in the dataset |
Glyma.04g088400 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g090400 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g09340 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g088400.1 sequence-type=CDS polypeptide=Glyma.04g088400.1.p locus=Glyma.04g088400 ID=Glyma.04g088400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGCCGAATTATCTCTTCCTCAGGATTCTTACTTTCTCGGATTCGACAGTTCCACCCAGTCGTTAAAGGCCACTGTGTTGGACTCCAACCTCAACATCGTAGCCTCAGAGCTTGTTCATTTCGATTCCGACTTGCCCCATTACAAAACCAAAGATGGGGTGCACAGAGACCCTTCTGGCAATGGCAGAATCGTTTCACCCACTTTGATGTGGGTGGAAGCTCTTGACCTAATTCTTCAAAAGCTTTCAAAATCAAATTTTGATTTTGCCAAGGTTGCTGCTGTTTCTGGCAGTGGCCAACAGCATGGTAGTGTGTATTGGAAGAGTGGCAGTTCTCAGATATTGTCATCATTGGATCCTAAGAAGCCATTGTTGGATCAGCTTGAAAATGCTTTTTCCATTAAGGAATCCCCAATTTGGATGGACAGTAGCACCACTGCTGAGTGTAGGGCTATAGAGAAGGCTTTTGGGGGAGCCTTGGAGTTGGCTCGTGTCACGGGATCACGTGCATATGAGAGGTTTACTGGTCCCCAGATCAAGAAGATATTTGATACTCAGCCAGAAATTTATGACGGCACTGAAAGGATATCGCTTGTTAGCTCCTTCATGGCGTCTCTTTGCGTTGGCGCTTATGCTTCCATTGATCATTCTGATGGTGGAGGCATGAATTTAATGGATTTAAAGGAAAAGGCCTGGTCTAAAGTAGCACTTGAGGCAACTGCCCCTGGTTTGGAGTCAAAACTTGGAGAGTTAGCCCCTGCCTATGCTGTTGCTGGAAATATTGCTCCATATTTTGTAGAGAGGTATAACTTTAACAAGGATTGCTTAGTTGTTCAATGGTCAGGAGACAATCCGAATAGTGTGGCAGGTTTGACCCTAAATATTCCAGGAGATCTCGCCATCAGCCTTGGCACTAGTGATACTGTATTTATGATCACTAAAGATCCTAATCCAGGATTAGAGGGACATGTCTTCCCCAATCCAGTTGATGCAGAAGGTTACATGGTAATGCTGGTATACAAAAATGGATCCCTTACCCGAGAAGATGTGCGCAACTGTTATGCAAACAAATCTTGGGATGTTTTCAATAAATTTTTGCAGCAAACACAGCCTTTAAATGGTGGAAAGTTAGGTTTCTACTACAAGGAGCATGAAATTCTACCTCCTCTTCCAGTTGGTTTCCACCGCTATATCATAGAAAATTTCTCAGACACACCAGATGGACTGAAGGAACAGGAAATGGAGGAGTTTGATCCTCCATCTGAGGTCCGGGCATTAATTGAGGGTCAATTTCTCTCAATGCGGGCTCATGCTGAAAGATTTGGAATGCCTTCTCCCCCAAAGAGAATTATAGCTACTGGTGGAGCATCAGCGAATCATTGCATCCTTAGTGCAATAGCTTCAATTTTTGGCTGTGATGTCTATACAGTTCAAAGACCTGATTCAGCTTCACTTGGAGCTGCATTGAGAGCTGCTCATGGCTGGCTCTGCAACAAGAAGGGCGGGTTTTTACCGATATCTGATATGTACGTGGACAAATTGGAGAAAACGTCCCTGAGCTGCAAACTTTCAGTGAGTGCTGGAGATCATGAATTGGTTTCCAAGTATGCCACCCTCATGAAAAAGAGAATTGAAATAGAGAATCGGCTCGTTCAAAAGCTTGGACGCTTTTGA
>Glyma.04g088400.1.p sequence-type=predicted peptide transcript=Glyma.04g088400.1 locus=Glyma.04g088400 ID=Glyma.04g088400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MAELSLPQDSYFLGFDSSTQSLKATVLDSNLNIVASELVHFDSDLPHYKTKDGVHRDPSGNGRIVSPTLMWVEALDLILQKLSKSNFDFAKVAAVSGSGQQHGSVYWKSGSSQILSSLDPKKPLLDQLENAFSIKESPIWMDSSTTAECRAIEKAFGGALELARVTGSRAYERFTGPQIKKIFDTQPEIYDGTERISLVSSFMASLCVGAYASIDHSDGGGMNLMDLKEKAWSKVALEATAPGLESKLGELAPAYAVAGNIAPYFVERYNFNKDCLVVQWSGDNPNSVAGLTLNIPGDLAISLGTSDTVFMITKDPNPGLEGHVFPNPVDAEGYMVMLVYKNGSLTREDVRNCYANKSWDVFNKFLQQTQPLNGGKLGFYYKEHEILPPLPVGFHRYIIENFSDTPDGLKEQEMEEFDPPSEVRALIEGQFLSMRAHAERFGMPSPPKRIIATGGASANHCILSAIASIFGCDVYTVQRPDSASLGAALRAAHGWLCNKKGGFLPISDMYVDKLEKTSLSCKLSVSAGDHELVSKYATLMKKRIEIENRLVQKLGRF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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