Glyma.04g087200

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Report for Sequence Feature Glyma.04g087200

Feature Type:	gene_model
Chromosome:	Gm04
Start:	7442908
stop:	7454670
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g087200

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G32820.1	AT	Tetratricopeptide repeat (TPR)-like superfamily protein	JGI	N/A	IEA
GO:0006336	GO-bp	DNA replication-independent nucleosome assembly	EnsemblGenomes	N/A	IEA
GO:0005634	GO-cc	nucleus	EnsemblGenomes	N/A	IEA
GO:0005515	GO-mf	protein binding	EnsemblGenomes	N/A	IEA
GO:0031491	GO-mf	nucleosome binding	EnsemblGenomes	N/A	IEA
PTHR15502	Panther	CALCINEURIN-BINDING PROTEIN CABIN 1-RELATED	JGI	N/A	IEA
PTHR15502:SF7	Panther	CALCINEURIN-BINDING PROTEIN CABIN-1	JGI	N/A	IEA

Expression Patterns of Glyma.04g087200

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g087200

Paralog	Evidence	Comments
Glyma.06g088900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g087200 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g09220	Wm82.a1.v1.1	IGC	As supplied by JGI

Coding sequences of Glyma.04g087200

Limit To All Plant Sequences

>Glyma.04g087200.1 sequence-type=CDS polypeptide=Glyma.04g087200.1.p locus=Glyma.04g087200 ID=Glyma.04g087200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTTCTCAATTGCAGCTATCAATGACACTGACTCGAAAAGTCAGTGGGAACCCCTAGCTCCCACGAAAGAAGCACAGGAATTTCATCTTTCCCAAACTTATCATGAAGGACTTCTCAAGTTACAAGCAAAAGAGTATGAGAAGGCTCGCGAGCTCTTAGAATCTGTCCTTAAAGATCCTCTTATTGCTAATGCTCAGGTGGATAGTAGTGCCAGTGATGGTCATCTATTGCAACTCAGATTTTTGGCATTGAAAAACCTTGCCGCTGTTTTTCTTCAGCAAGGCTCTACACATTATGAGAATGCTCTACGATGTTATCTTCAAGCTGTGGAGATTGATTCTAAAGATTCTGTTGTCTGGAACCGGCTGGGAACACTGTCATGCTTGATGGGCTCACTGAGTATTTCACGTTGGGCATTTGAGCAAGGACTCTCATGTAGCCCTAATAACTGGAATTGCATGGAGAAGCTTTTGGAAGTTCTTATTGCAATTGGTGATGAGGTTGCTTGCCTTTCTGTCTCTAAATTGATTTTGAGGCACTGGCCCTCGCATTCTCGTGCTTTGCATGTTAGAAATACCATCGAAGAATCAGAACCTTTGCGATTTGCTCCAAGAGGCATAGACAAATTGGAACCTCAACATGTGCGGCTCAAATTTCCTGACAAGAGGAAAGCTACTAATGAGAATGTAGATGAGGATGTTGCATTCAAAAAGCTGAACCAGAATAAAGAACTGCACCTGACAGAAGTTTCCTGGGTGGCTCTTGCTGATGCACTTCTGGAAATCTTATCACCACAAAGTTCCAAGATGGATCCTGAAAAAGCATTCAGTTCTCCTGATATTAGGCTAAGCATAATCTTACCTAGTAGCTCAGAAGCTGTTATGAACACTGTGGAAATGAAAGGGTCCAATTGTGAAAATAGTGTTTCTGGTGATGGTAACATAGAACGATCAAGTGCTTTTAAAGAGAAAGAAGCTAATATCCAAGAAGAACAACCGCATGAAAGGCGAAGTTCTCGACTTGAAAGGCTCCGGAGTCGTAAACCAGGGAAAGAAGAATCTGATTCTTCTTGTGGAAAGGACCCTACCAAGGTTGTCATTCAATATTTAGAGCCATTTATTTCTGGTGGATTGGGGGGTCAAGATACAATTGATAGAGATACCACGAAAGTATCCTGTTTAGGAAATTCTGAATATTATAATGTTTCTGCATTTTTAAGAGAAACTTCAAACAATTATGGTGCTTATCATATGGGGCACTTGCTTTTAGAAGAAGTTGCAAGACAAGGTCTCACATATCAGGATGCTTTTGTCAAATTTTTGGAGTTGGAAAAGTTGACAAGGCATTGGGGAAAGGAGAGAACTGCTGAATGTAATATTTTTCTTGCTGAGCTGTATTATGACTTTGGGTCATGCTCCCCCACTGGTTCTAAACAATTGGAATTTATTTCTGAGACGTCTTATCATCTTTGTAAGATTATAGAATCTGTAGCTTTAGATTATCCTTTTCACTTGACTCATGCCTTGAATGAAAATAGTTTTTCAATAGATAGTAACCAAGAGACCCATGGAAAAACAATAAATACCTCGACTGAGAGCAATTCAAATTTAGACAGCTCACTTCTGATGAAAAACTGTCCCCTTTGGTCTCGATTCTTCTGGCTAAGTGGGAGATTGTCTATTGTTGATGACAACAGGGCAAAAGCATGTCAAGAATATTGTATTGCTTTGACACTTTTGGCGAAGAGAGAAAAGGAAAATTCTCTATGTTCAGTCCCCCGCCCACATTGCAAGGCTGTAAAAGAGCTAAACTTTGATAGAGTTCTTGATGAAATTAATATATTAAAGGTCAATTTCTTGATGGAAAAGTCTGTCATTAAGATGATGGAACAAGAAAAGTTTTTGGAGTGTGTATCCCTGCTTTCTCCACTTCTATTCTCCACACAGGATGTCTACCCCAATTCATTCTCTTTATCCATGACTGATAAAAGAGATGAAAAGATAACTTCCACTGAACTTATGGCTGTAGATGTTCTAATGGAAGCATGTCAAAAAACAAAGCCAATGGATGTAGAGATGTATTTTAATTGTCATTATAGAAAGCTGAAAATACTTATGACAAAGATGGGTTTAAAGACATGTATTACATCATTTAAGTCTTCTGATCAAGCACCTATTTTAACTGTGTCTCCTAATTTTGATATTGATTCAAAGGAAAGTTCTAGCAAGAACTGTAGTCACTTGGTCACGGATGAAGTGAAGGCACTCTCTGACTGTATTTCACAAGTGAAGAAAATTATCGATCAACATGGAGATTCTGATGGCCTTTCTGTTCCAACAAGCAGCATTTGTCAAATGCAATCCCTGCTGTTGTTAATCATGAGCTATGTTGGCAACATACTTGCCCTCAACAAAGCCTCAGCACAAGTAATTTCTGATCAAGCTGAAAGCAGCTGTTTCGTTGATGCAGCCATTGTTTTCTGCAAACTCCAGCATCTTAGCCCAACCATGCCTATCAAGACTCAAGTTGATTTAATTGTTGCAACACATGACTTGCTTGCTGAATATGGGCTTTGCTGTTTGGGTGAAGGTGGCAAAGGTGAAGAAGGAACATTTCTTAGATTTGCGATAAAGCATCTCTTGGCCTTGGATACGAAGCTTAAATCCAGCTTTAACCATAAAGAATCAATGCAATGTGAAGAAGTGTCCAAAAACAGTCTCGTCAATGTGTCTGTTGAAGAATCAAAATTGGATGCATTAGACATCCAGATGGATTTGACCAAAATTGATGAAATTAATTCAGAGAAAAAGGATGTTTCTGAAGGAATAATATCCAAAGGCATTTCATCTTGCAGAGTTCATGATAAAGACGGTAAGGAAGTAGAGTTTGAAAATCATGGAGGTGCTGGCACTGGCAGTAAGTTAATTAAGGGCGAAAATTTAAGCAATCAATTGATTGAATGTGAAGATGAACTTTCTGAATATGAACGGGAGGAACTTGAGTCTAAAATTGACTGTGCCTTAGATCAGTGCTTTTTCTGTTTATATGGATTACATCTGAGATCTGATTCATCTTATGAGGATGATCTAGTGGTGCACAAAAACACAAGCCGAGGAGATTATCAAACCAAGGAACAATGTGCTGATGTTTTCAAGTATGTTCTTCCCTATGCAAAGGCATCTTCTAGGACTGGACTGGTCAAACTTCGTAGAGTTTTAAGAGCTATTAGGAAGCACATTCTGCAGCCACCAGAGGACCTCTTGGCAGGAAACCCTATTGATAAGTTCTTAGATGATCCTAATCTATGTGAAGATAAGCTCTCAGAGGAGGCTGGGTCTGATGGGTTTCTTGAATCTATTACTAAGAGAATGTTTCCTGATGTGGGTGGCCTTGCTCAGTATAATGCAACATTATTGAGGAGGTCTGAGCCATATTTGGAGGTATACTGTAACTTGTATTATTTCTTGGCTCTGTCTGAGGAAATGAGTGCAACAGATAAGTGGCCTGGATTTGTGCTGACCAAGGAAGGGGAAGAATTTGTTGAACAAAATGCAAAGCTCTTCAAATATGATCTCATGTACAATCCTCTGCGCTTTGAAAGCTGGCAGAGACTTGGAAATATTTATGATGAGGAAGTAGATTTGTTACTAAATGATGGTAGCAAGCACGTTAATGTAGTAGGGTGGAGGAACAATGCTACTTTATCCGAGAGAGTGGAAACAAGCCGAAGGAGGAGTAGACGGTGCCTACTAATGAGTTTAGCTTTGGCAAATACATCTGCTCAGCAGTGTGAGATACACGAGTTATTGGCATTGGTGTACTACGACAGTCTTCAAAATGTAGTCCCATTTTATGATCAGAGATCTGCTTTGCCCTTAAAGGATGCGGCATGGATGATGTTTTGTGAGAACTCAATGAAGCATTTTAAGAAAGCCTTCGCACTTAAGCAAGATTGGTTGCATGCCTTTTACTTGGGTAAACTCAGCAAAAAACTTGGATATTCACACGAAATTGCATTATCATATTACAATAAAGCTATTGCTTTGAACACATCAGCTGTTGATCCTGTCTATAGGATGCATGCCTCACGTTTGAAATTATTATTTAAGTGTGGAAAGCAGAATTTGGAGATTTTGAAGGTTCTCTCGGCAAACTCCTTTAATCAATCTGTAAAAGAAGCTGTCACAAGTATTCTTATTGGTATTGATAGCTCATTTTTAAATACAAAGGAGAGACATATTGATGCCAATTTTGTGGAAACAAAGCATGAAGAGTTGCTCAAATTGGATACAGTATGGTCTATGCTTTACAATGATTGCCTTTCTGCTCTTGAAACATGCGTAGAGGGGGATCTCAAACATTTCCATAAGGCCAGATACATGCTGGCTCAAGGACTGTACAAAAGAGGTGAGAGTGGTGATATAGAGAGGGCAAAAGATCATCTATCTTTCTGCTTCAAATCTTCACGCTCATCATTTACAATAAATATGTGGGAAATTGATAGCACAGTAAAAAAAGGAAGGCGCAAGACACCAGGTACTGCTGGGAACAAAAAATCCCTTGAGGTTAACTTACCTGAAAGTTCTCGAAAATTTATTACTTGCATTCGAAAGTATTTGCTGTTTTATCTCAAACTATTGGAAGAGACTGGAGATAGATGTATTCTCGAACGTTCATATGTTGCTCTTCGTGCAGATAAACGGTTTTCATTATGTATTGAAGATCTTATACCAGTGGCTATCGGAAGGTATCTAAAGGCCCTGATTTCAACTATGTGCCATTCTCAGACTACTGCCTCTGGTTCAGTGAGCAGTTCTAACAATGTGCTGGAGAGAATGTTTGCATTGTTCATGGAGCAAGGGAGCTTATGGCCAGAAATATGCAGTTTGCCCGAAATTGAAGGCTCAGATATGTCAGAGACTATCATATATGGATATCTTCATGAACATATTGTATTGTTGGAGAAAAATGGAAAACTGGAAACTCTTGAAGCAACAAATGAGAAGATTAGGAAGCGTTCTAAGAATCCAAAGTTCTCAGACAGTAATTGTGCAAAAGTTGGCAAGCATGCTTCTGTTGCTTGGTGTCGATCTCTTGTATATAATTTGGCACAAATAACTCCATTATCTTGTGAATTCTCAAATGGGATTCAGGTCCTTAGTTTGACTGATGGTGGGATGGATAATAGCCAGTTGCTCTGTATTGATTTGCAGCCAAAAGAATTATGGAGTACAGCTTTTGAAGATCCAACTCATTTAGAAAAGATTGAAACAAAATGGAGCACTATTTTATCTAAAGTAAAAAATATTATTATCAAGAAAGCTTCTGATGAGAATTTGGAAACTGCAAACACTTTGCTCAGAGCTTGCTATAATTTTTACCGGGAGAGTTCTTCTGTAGTGCTTACCTCTGGACTCAACTTTTATTTGATTCCATCTCAATCAGTAACACAGACACCATTCAACCCAAGTACTGCTGGGATTGAAGCACTTGATCTGAGCATACCAAGGAAGCTTCTCTTGTGGGCCTACGTGCTATCCCATGGACGTTGTGCAAATATCTCAATTGTTGTAAAGCATTGTGAAGAAATGTCGAAGTCCAAGATGAAAAGAGGAAGTGGAACGTCACCTGCGTTATCAAACACATCTCCTGCCCCTAGTCTTCCAGGTAGCGGTAAAAATGGACCAAATTCTGCCGGAGGCATTGACGTTGATTCTGCACATGTCACAACAGTGGGGTCCGGTTCAGTTTCTAGTGGCAATACCACTAATTTTGTGAATTCACTTCCTTCATATGACATTCAGAAAAATCTCTTTGCTTCTCCCCAGCTGCATCAATGCACCAGTAACGATGCAGAACGAAGCAATTTGGTAGCACTTGAAGGAGATACAGAGGGAGATTGA

Predicted protein sequences of Glyma.04g087200

Limit To All Plant Sequences

>Glyma.04g087200.1.p sequence-type=predicted peptide transcript=Glyma.04g087200.1 locus=Glyma.04g087200 ID=Glyma.04g087200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MFSIAAINDTDSKSQWEPLAPTKEAQEFHLSQTYHEGLLKLQAKEYEKARELLESVLKDPLIANAQVDSSASDGHLLQLRFLALKNLAAVFLQQGSTHYENALRCYLQAVEIDSKDSVVWNRLGTLSCLMGSLSISRWAFEQGLSCSPNNWNCMEKLLEVLIAIGDEVACLSVSKLILRHWPSHSRALHVRNTIEESEPLRFAPRGIDKLEPQHVRLKFPDKRKATNENVDEDVAFKKLNQNKELHLTEVSWVALADALLEILSPQSSKMDPEKAFSSPDIRLSIILPSSSEAVMNTVEMKGSNCENSVSGDGNIERSSAFKEKEANIQEEQPHERRSSRLERLRSRKPGKEESDSSCGKDPTKVVIQYLEPFISGGLGGQDTIDRDTTKVSCLGNSEYYNVSAFLRETSNNYGAYHMGHLLLEEVARQGLTYQDAFVKFLELEKLTRHWGKERTAECNIFLAELYYDFGSCSPTGSKQLEFISETSYHLCKIIESVALDYPFHLTHALNENSFSIDSNQETHGKTINTSTESNSNLDSSLLMKNCPLWSRFFWLSGRLSIVDDNRAKACQEYCIALTLLAKREKENSLCSVPRPHCKAVKELNFDRVLDEINILKVNFLMEKSVIKMMEQEKFLECVSLLSPLLFSTQDVYPNSFSLSMTDKRDEKITSTELMAVDVLMEACQKTKPMDVEMYFNCHYRKLKILMTKMGLKTCITSFKSSDQAPILTVSPNFDIDSKESSSKNCSHLVTDEVKALSDCISQVKKIIDQHGDSDGLSVPTSSICQMQSLLLLIMSYVGNILALNKASAQVISDQAESSCFVDAAIVFCKLQHLSPTMPIKTQVDLIVATHDLLAEYGLCCLGEGGKGEEGTFLRFAIKHLLALDTKLKSSFNHKESMQCEEVSKNSLVNVSVEESKLDALDIQMDLTKIDEINSEKKDVSEGIISKGISSCRVHDKDGKEVEFENHGGAGTGSKLIKGENLSNQLIECEDELSEYEREELESKIDCALDQCFFCLYGLHLRSDSSYEDDLVVHKNTSRGDYQTKEQCADVFKYVLPYAKASSRTGLVKLRRVLRAIRKHILQPPEDLLAGNPIDKFLDDPNLCEDKLSEEAGSDGFLESITKRMFPDVGGLAQYNATLLRRSEPYLEVYCNLYYFLALSEEMSATDKWPGFVLTKEGEEFVEQNAKLFKYDLMYNPLRFESWQRLGNIYDEEVDLLLNDGSKHVNVVGWRNNATLSERVETSRRRSRRCLLMSLALANTSAQQCEIHELLALVYYDSLQNVVPFYDQRSALPLKDAAWMMFCENSMKHFKKAFALKQDWLHAFYLGKLSKKLGYSHEIALSYYNKAIALNTSAVDPVYRMHASRLKLLFKCGKQNLEILKVLSANSFNQSVKEAVTSILIGIDSSFLNTKERHIDANFVETKHEELLKLDTVWSMLYNDCLSALETCVEGDLKHFHKARYMLAQGLYKRGESGDIERAKDHLSFCFKSSRSSFTINMWEIDSTVKKGRRKTPGTAGNKKSLEVNLPESSRKFITCIRKYLLFYLKLLEETGDRCILERSYVALRADKRFSLCIEDLIPVAIGRYLKALISTMCHSQTTASGSVSSSNNVLERMFALFMEQGSLWPEICSLPEIEGSDMSETIIYGYLHEHIVLLEKNGKLETLEATNEKIRKRSKNPKFSDSNCAKVGKHASVAWCRSLVYNLAQITPLSCEFSNGIQVLSLTDGGMDNSQLLCIDLQPKELWSTAFEDPTHLEKIETKWSTILSKVKNIIIKKASDENLETANTLLRACYNFYRESSSVVLTSGLNFYLIPSQSVTQTPFNPSTAGIEALDLSIPRKLLLWAYVLSHGRCANISIVVKHCEEMSKSKMKRGSGTSPALSNTSPAPSLPGSGKNGPNSAGGIDVDSAHVTTVGSGSVSSGNTTNFVNSLPSYDIQKNLFASPQLHQCTSNDAERSNLVALEGDTEGD*

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