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Report for Sequence Feature Glyma.04g080800

Feature Type:gene_model
Chromosome:Gm04
Start:6790071
stop:6794254
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g080800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25754.1AT RNA polymerase I-associated factor PAF67 JGI N/AIEA
GO:0001731GO-bp formation of translation preinitiation complex EnsemblGenomesN/AIEA
GO:0001732GO-bp formation of cytoplasmic translation initiation complex EnsemblGenomesN/AIEA
GO:0002183GO-bp cytoplasmic translational initiation EnsemblGenomesN/AIEA
GO:0006412GO-bp translation EnsemblGenomesN/AIEA
GO:0006413GO-bp translational initiation EnsemblGenomesN/AIEA
GO:0006446GO-bp regulation of translational initiation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm JGI N/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex EnsemblGenomesN/AIEA
GO:0005852GO-cc eukaryotic translation initiation factor 3 complex JGI N/AIEA
GO:0016282GO-cc eukaryotic 43S preinitiation complex EnsemblGenomesN/AIEA
GO:0033290GO-cc eukaryotic 48S preinitiation complex EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity EnsemblGenomesN/AIEA
GO:0003743GO-mf translation initiation factor activity JGI N/AIEA
KOG3677 KOG RNA polymerase I-associated factor - PAF67 JGI N/AIEA
PTHR13242Panther EUKARYOTIC TRANSLATION INITIATION FACTOR 3 JGI N/AIEA
PF10255PFAM RNA polymerase I-associated factor PAF67 JGI N/AIEA

Expression Patterns of Glyma.04g080800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g080800
ParalogEvidenceComments
Glyma.06g082500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g080800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08570 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g080800
>Glyma.04g080800.1 sequence-type=CDS polypeptide=Glyma.04g080800.1.p locus=Glyma.04g080800 ID=Glyma.04g080800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGAACCAAGACTTCGAAGAGCGCTCGCAGCAACCGCAGGAGCTAGGGTACGACCCGAACTTTGTCCCCGACTCGGTAAAATCTTTTGTGGTTCACCTGTACCGTCACATCCGTGAAAAGAACGTGTACGAGATCCACCAGATGTACGAGAGCTCCTTCCAGACCCTCTCGGAGCGTCTCTTCAAGGATACCCCGTGGCCCTCCGTGGACGCCGTCGCGCACTACGTCGACAACGACCACGTCTTCTGCCTCCTCTACCGCGAGATGTGGTTCCGCCACCTCTACGCTCGTCTCACTCCGACGCTCCGCCAGCGCATCGACTCGTGGGACAACTACTGCAGCCTCTTCCAGGTTGTCCTCCACGGGGTCGTCAACATGCAGCTCCCCAACCAGTGGCTATGGGACATGGTCGACGAGTTCGTCTACCAGTTCCAGAGCTTCTGCCAGTACCGTGCCAAGATGAAGAGCAAGACTGAACAAGAAATCGCCCTCTTGCGCCAGTTCGACCAGGCCTGGAATGTTTTCGGGGTCCTCAACTTCCTCCAGGCGCTGGTGGAGAAGAGTGCCATTATTCAGATTCTGGAGCAGGAGAAGGAGGGGCTCGAGCAGTTTACCGCGACCGATGGTTATGATTACAATGGGGGGAGCAATGTGCTGAAGGTGTTGGGGTATTTTAGCATGGTGGGCTTGCTTAGGGTTCATTGTCTTTTGGGGGATTATCATACCGGGCTCAAGTGCTTGCTTCCTATTGATATTACTCAGCAAGGGGTTTATACCAGTGTTATTGGGAGTCACATCACCACCATTTATCACTATGGTTTCGCCAATCTCATGCTCCGCAGATATGTGGAAGCAATTCGTGAATTTAACAAAATTCTCTTGTACATCTTTAAGACAAAGCAGTATCATCAGAAATCACCCCAATATGAGCAGATACTGAAGAAAAATGAACAAATGTATGCCTTACTGGCAATTAGCCTTTCACTCTGCCCCCAAAGCAGGCTTGTTGATGAAACTGTGAACTCTCAGTTACGTGAGAAGTATGGTGAAAAGATGGTTAGAATGCAGAGGTATGATGATGAGGCATTTGCTATCTATGATGAGCTCTTCTCATATGCATGCCCCAAGTTCATTACCCCTTCAGCACCTAGTTTCGAGGAGCCTCTAGTAAATTACAATCAGGATGCCTATAGACTTCAGTTGAAACTGTTCCTTTATGAAGCAAAGCAACAACAGTTGCTATCAGGTGTCCGCACCTTCTTGAAAGTGTATTCAACAATCTCCCTCACAAAACTTGCAAGTTACATGGAAGTGGATGAACCCACCTTAAGGACTATCTTGATGACATACAAGCACAAGACACATGCTGTTGATAGTGATGGGAAAATTACATCCAATGCCGATTTAGATTTCTATATTGATGATGACACAATTCATGTTATGGAGTCTAAGCCTGCCAAACGTTATGGGGATTACTTTTTGCGTCAGATTGTCAAGCTTGAAGGGGTGATCAATGAGATGGACGGTATAAAGCTGGAGTGA
Predicted protein sequences of Glyma.04g080800
>Glyma.04g080800.1.p sequence-type=predicted peptide transcript=Glyma.04g080800.1 locus=Glyma.04g080800 ID=Glyma.04g080800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MANQDFEERSQQPQELGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKSKTEQEIALLRQFDQAWNVFGVLNFLQALVEKSAIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGLKCLLPIDITQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKQYHQKSPQYEQILKKNEQMYALLAISLSLCPQSRLVDETVNSQLREKYGEKMVRMQRYDDEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLTKLASYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADLDFYIDDDTIHVMESKPAKRYGDYFLRQIVKLEGVINEMDGIKLE*






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