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Report for Sequence Feature Glyma.04g080200

Feature Type:gene_model
Chromosome:Gm04
Start:6742030
stop:6748050
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g080200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G03120.1AT signal peptide peptidase JGI N/AIEA
GO:0006508GO-bp proteolysis EnsemblGenomesN/AIEA
GO:0005765GO-cc lysosomal membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane EnsemblGenomesN/AIEA
GO:0016021GO-cc integral component of membrane JGI N/AIEA
GO:0030660GO-cc Golgi-associated vesicle membrane EnsemblGenomesN/AIEA
GO:0071458GO-cc integral component of cytoplasmic side of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0071556GO-cc integral component of lumenal side of endoplasmic reticulum membrane EnsemblGenomesN/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity EnsemblGenomesN/AIEA
GO:0004190GO-mf aspartic-type endopeptidase activity JGI N/AIEA
KOG2443 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR12174Panther SIGNAL PEPTIDE PEPTIDASE JGI N/AIEA
PTHR12174:SF23Panther MINOR HISTOCOMPATIBILITY ANTIGEN H13 JGI N/AIEA
PF04258PFAM Signal peptide peptidase JGI N/AIEA

Expression Patterns of Glyma.04g080200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g080200
ParalogEvidenceComments
Glyma.06g081900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g080200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08510 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g080200
>Glyma.04g080200.2 sequence-type=transcript locus=Glyma.04g080200 ID=Glyma.04g080200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AAATTCCGAAACCTGACGTGGAAGCTTGCGAAAATTTGATTGGTTGAGATAGCTCAAACTACGTGGGTCGGTTTAGCAATTAGCAGAACAGTGAAGTTTGATATATCGTCACCATAAGTAACAATCACGGTCACTGCCAATTCACCGTTTGCCACGTTCGCAACCAAACACCTtctctctctctctctctttgactctTTAGTGGAAGGCCATTCTCGCAACGTTTGAGTTCAGCAGATCCAGAATTTTTCAGAAAACAGGTTTAGGAGAATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTATTTTGACTGCTTCCCTCACTGTGTTTGTGGGCTGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTTCATTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACATTTTTTTGTGCCTGGTATGCTTTGCAGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAAGTTGAAGCATGCCCAATACCAATACTTCCGAGTCACAGAACAAATACTGCTTTTTTCTGAGAAAACCGTTTCTTTTAAAGCTAACTTATTTCAGCAGCACACCTCTGTAACTGATTGTGATTAAAAAAAAATGTATTACTTATTTTTCAAATTGGCGTTTTGCTTTTACTGGCTGACTGCCCCAGTCTGGGTTTCCATAGCAAACTTTCTAAGAATTTTCTTCTCTCTTGCCAGCACTCGCAGATGCACACACATGCAATTTTTTTGTGCTAGTATTACTAGTTATGCCTATGATGCTTCTTCTGGAAGACTTATGCTCTGCCTGAGTGAGTGTAATACTCTTTGGAAAAGACAAAAACTAATGTATATCTATGTTGAAATTGCATCAAATACAATAATAATCAGCCTTAGAGAATGAAC
Coding sequences of Glyma.04g080200
>Glyma.04g080200.1 sequence-type=CDS polypeptide=Glyma.04g080200.1.p locus=Glyma.04g080200 ID=Glyma.04g080200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTATTTTGACTGCTTCCCTCACTGTGTTTGTGGGCTGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTTCATTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACATTTTTTTGTGCCTGGTATGCTTTGCAGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAA

>Glyma.04g080200.2 sequence-type=CDS polypeptide=Glyma.04g080200.2.p locus=Glyma.04g080200 ID=Glyma.04g080200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAATACGGAACGAATTGCCAATTTGGCTTTAGCAGGTTTAACCTTAGCGCCTCTTGTTGTGAAAGTAGATCCGAATTTAAATGTTATTTTGACTGCTTCCCTCACTGTGTTTGTGGGCTGTTACCGCTCCGTTAAACCAACCCCACCAACTGAGACAATGTCCAATGAACATGCCATGCGTTTTCCCTTTGTTGGGAGTGCAATGTTATTGTCACTCTTCTTACTCTTCAAGTTTCTATCCAAGGACTTGGTGAACACTGTATTGACAGGCTACTTCTTTGTACTTGGGATTGTTGCCCTTTCGGCAACATTATTACCATTTATTAAACGTTTTCTGCCAAAGCATTGGAATGAGGACCTCATAGTCTGGCGTTTTCCATATTTCCGTTCATTGGAGATTGAGTTTACAAAGTCACAGGTCGTTGCTGGAATCCCTGGGACATTTTTTTGTGCCTGGTATGCTTTGCAGAAGCATTGGCTAGCAAATAATATATTGGGTCTTGCTTTCTGTATTCAGGGAATTGAAATGCTTTCTCTTGGGTCTTTCAAGACTGGTGCTATTCTCTTGGCTGGTCTATTTGTGTATGACATTTTCTGGGTTTTCTTCACCCCAGTGATGGTCAGCGTTGCAAAATCATTTGATGCTCCAATAAAGCTTTTGTTCCCCACAGCAGATTCAGCAAGGCCATTTTCAATGCTTGGCCTTGGTGATATTGTTATCCCTGGTATTTTTGTAGCATTGGCTTTGCGATTTGATGTATCTAGAGGAAAACAGCCCCAGTATTTCAAGAGTGCATTTGTAGGATACACTGTTGGCTTGGTCCTTACAATTGTTGTGATGAACTGGTTTCAGGCTGCACAGCCTGCTCTTTTGTATATTGTACCTTCTGTAATTGGATTTTTGGCTGCTCATTGCTTATGGAATGGTGATGTCAAACAGTTGTTGGAGTTCGATGAGTCAAAGACTGCCAATTCACCTCAAGAGAGTGCTGACGACAAGTCTAGCAAAAAGGTTGAATAA
Predicted protein sequences of Glyma.04g080200
>Glyma.04g080200.1.p sequence-type=predicted peptide transcript=Glyma.04g080200.1 locus=Glyma.04g080200 ID=Glyma.04g080200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNTERIANLALAGLTLAPLVVKVDPNLNVILTASLTVFVGCYRSVKPTPPTETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNEDLIVWRFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVIGFLAAHCLWNGDVKQLLEFDESKTANSPQESADDKSSKKVE*

>Glyma.04g080200.2.p sequence-type=predicted peptide transcript=Glyma.04g080200.2 locus=Glyma.04g080200 ID=Glyma.04g080200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKNTERIANLALAGLTLAPLVVKVDPNLNVILTASLTVFVGCYRSVKPTPPTETMSNEHAMRFPFVGSAMLLSLFLLFKFLSKDLVNTVLTGYFFVLGIVALSATLLPFIKRFLPKHWNEDLIVWRFPYFRSLEIEFTKSQVVAGIPGTFFCAWYALQKHWLANNILGLAFCIQGIEMLSLGSFKTGAILLAGLFVYDIFWVFFTPVMVSVAKSFDAPIKLLFPTADSARPFSMLGLGDIVIPGIFVALALRFDVSRGKQPQYFKSAFVGYTVGLVLTIVVMNWFQAAQPALLYIVPSVIGFLAAHCLWNGDVKQLLEFDESKTANSPQESADDKSSKKVE*






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