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Report for Sequence Feature Glyma.04g080000

Feature Type:gene_model
Chromosome:Gm04
Start:6724579
stop:6733710
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g080000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11490.1AT adaptin family protein JGI N/AIEA
GO:0006886GO-bp intracellular protein transport EnsemblGenomesN/AIEA
GO:0006886GO-bp intracellular protein transport JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport EnsemblGenomesN/AIEA
GO:0016192GO-bp vesicle-mediated transport JGI N/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat EnsemblGenomesN/AIEA
GO:0030117GO-cc membrane coat JGI N/AIEA
GO:0030131GO-cc clathrin adaptor complex EnsemblGenomesN/AIEA
GO:0030131GO-cc clathrin adaptor complex JGI N/AIEA
GO:0005488GO-mf binding EnsemblGenomesN/AIEA
GO:0008565GO-mf protein transporter activity EnsemblGenomesN/AIEA
GO:0030276GO-mf clathrin binding EnsemblGenomesN/AIEA
KOG1061 KOG Vesicle coat complex AP-1/AP-2/AP-4, beta subunit JGI N/AIEA
PTHR11134Panther ADAPTER-RELATED PROTEIN COMPLEX, BETA SUBUNIT JGI N/AIEA
PTHR11134:SF4Panther AP-4 COMPLEX SUBUNIT BETA-1 JGI N/AIEA
PF01602PFAM Adaptin N terminal region JGI N/AIEA
PF09066PFAM Beta2-adaptin appendage, C-terminal sub-domain JGI N/AIEA

Expression Patterns of Glyma.04g080000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g080000
ParalogEvidenceComments
Glyma.06g081600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g080000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08480 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g080000
>Glyma.04g080000.1 sequence-type=CDS polypeptide=Glyma.04g080000.1.p locus=Glyma.04g080000 ID=Glyma.04g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCCACCGCCACCGCAGTCTCATCGATCGCCCTCACCGTCGCAACCGTCAGGGAAGAGTGAAGTCTCCGATCTGAAATCGCAGCTCCGGCAGCTAGCTGGGAGCCGAGCTCCGGGCGCTGATGATTCTAAGAGGGATCTCTTCAAGAAGGTGATTTCCAACATGACTATAGGTATTGATGTCTCATCTCTCTTTGGCGAGATGGTAATGTGCTCTGCAACGTCAGATATTGTTCTGAAAAAAATGTGCTACCTATATGTTGGGAACTATGCTAAGGTCAATCCTGATCTTGCGCTTTTGACGATTAATTTTCTGCAAAGAGATTGCAAGGATGAGGATCCAATGATTCGGGGACTAGCATTGAGGAGTTTGTGTTCGCTCCGGGTGGCAAACTTGGTGGAGTATTTGGTTGGGCCATTAGGATCTGGATTGAAGGACAATAATAGTTATGTGAGGATGGTGGCAGTTATTGGGGTTTTGAAACTATATCATATATCAGCTTCCACCTGTATTGATGCTGATTTTCCAGCAACACTGAAGCATTTGTTGCTTAATGACCCTGATGCTCAGGTAGTTGCAAATTGTTTGTCTGCTTTACAAGAAATTTGGACCTTAGAGTCATCCACATCAGAGGAAGCAGCCAGGGAGAGAGAAACTCTACTTAGCAAGCCAGTTGTATATTACCTTTTGAATCGCATTAAGGAATTTAGTGAATGGGCTCAGTGTCTTGTGCTGGAATTGGTGTCCAAGTACATTCCATCAGATAACAGTGAAATATTTGATATAATGAATCTTCTTGAAGATAGGCTCCAGCATGCAAATGGTGCTGTTGTCTTGGCAACTATTAAAGTATTTCTGCAGTTGACTTTGTCTATGGCTGATGTGCATCAGCAGGTATATGAGCGCATCAAAGCCCCTCTCTTAACTCAAGTGAGCTCAGGAAGTCCAGAACAATCTTATGCAGTTTTAAGTCACCTGCATATTTTGGTCATGCGTGCACCTTATATATTTTCCTCAGACTACAAACACTTCTATTGCCAGTATAATGAGCCATCATATGTTAAAAAGTTGAAGCTTGAAATGCTGACTGCAGTTGCAAATGAAACTAACACCTATGAGATAGTGACAGAATTATGTGAATATGCTGCAAATGTTGACATTCCCATTGCAAGGGAATCAATTCGAGCTGTTGGGAAGATAGCATTGCAGCAGTATGATGTCAATGCTATTGTTGATCGACTTCTCCAGTTTCTTGAGATGGAAAAGGACTATGTTACTTCTGAAGCTCTGGTGCTTGTGAAAGATCTGCTAAGAAAATATCCACAATGGAGTCAGGATTGTATTGCTGTTGTTGGAAATATCAGTAGTAAAAATGTCCAAGAACCCAAGGCTAAGGCAGCTCTTATATGGATGTTGGGGGAATATTCTCAGGACATGCATGATGCTCCATATGTCTTGGAGAGTTTAGTTGAAAACTGGGATGAGGAGCATTCTGCTGAGGTTCGCTTACATCTTCTTACTGCAGTTATGAAGTGTTTCTTTAAGCGACCACCTGAAACTCAAAAAGCATTAGGAGCTGCATTGGCTGCTGGGCTTGCTGATTTTCACCAGGATGTTCATGATAGGGCCTTATTTTATTACAGGCTTCTGCAATACAATGTATCAGTGGCAGAGAGTGTGGTTAACCCTCCAAAGCAAGCAGTTTCAGTATTTGCTGATACTCAGAGCAGTGAAATCAAAGATCGCATATTTGATGAATTTAACAGTTTGTCTGTTGTATACCAAAAGCCTTCTTATATGTTCACTGATAAGGAACACCGAGGGACATTTGAGTTTGCAGATGAACTTGGAAATCTATCTATTAGTGCAGAATCTTCAGATTCTGTTGTTCCAGCTGAGAGAGTGGAAGCAAATGACAAGGATCTGCTTCTAAGTACTTCAGAAAAAGATGAAGGAAGAGATCCTGGTAGCAATGGTTCTGTCTATAATGCTCCTTCCTATAATGGTTCTTCTGCCCCTTCTACAACTTCACAACCACTTGCAGATTTGTCATTTCCAAGTACTGGCATATCCGGTCAAGCTCCTGCTTCTAGCTTGGCAATTGATGATCTACTTGGTTTAGATTTTCCAGTTGGGACTGCAGTCACACCTTCACCTCCTCCATTGAACCTAAACCCAAAAGCTGTACTGGATCCTGGTACATTTCAGCAGAAATGGCGTCAACTGCCAATATCCTTATCTGAGGAATATTCTCTAAGTCCTCAAGGAGTTGCATCGTTGACAACTCCTCATGCACTTCTGCGGCACATGCAAAGTCATTCAATACAATGCATTGCATCCGGTGGTCAGTCTCCCAACTTCAAGTTCTTTTTCTTTGCTCAGAAAGCAGAAGCAGCATCAATGTATCTTGTAGAGTGTATAATCAACACATCGTCAGCCAAGTCACAGATTAAAATAAAAGCTGATGACCAAAGTTCATCCCAGGCATTCTCTACTTTATTCCAATCAGCCTTGTCCAAATTTGGTTTACCTTGA
Predicted protein sequences of Glyma.04g080000
>Glyma.04g080000.1.p sequence-type=predicted peptide transcript=Glyma.04g080000.1 locus=Glyma.04g080000 ID=Glyma.04g080000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAPPPPQSHRSPSPSQPSGKSEVSDLKSQLRQLAGSRAPGADDSKRDLFKKVISNMTIGIDVSSLFGEMVMCSATSDIVLKKMCYLYVGNYAKVNPDLALLTINFLQRDCKDEDPMIRGLALRSLCSLRVANLVEYLVGPLGSGLKDNNSYVRMVAVIGVLKLYHISASTCIDADFPATLKHLLLNDPDAQVVANCLSALQEIWTLESSTSEEAARERETLLSKPVVYYLLNRIKEFSEWAQCLVLELVSKYIPSDNSEIFDIMNLLEDRLQHANGAVVLATIKVFLQLTLSMADVHQQVYERIKAPLLTQVSSGSPEQSYAVLSHLHILVMRAPYIFSSDYKHFYCQYNEPSYVKKLKLEMLTAVANETNTYEIVTELCEYAANVDIPIARESIRAVGKIALQQYDVNAIVDRLLQFLEMEKDYVTSEALVLVKDLLRKYPQWSQDCIAVVGNISSKNVQEPKAKAALIWMLGEYSQDMHDAPYVLESLVENWDEEHSAEVRLHLLTAVMKCFFKRPPETQKALGAALAAGLADFHQDVHDRALFYYRLLQYNVSVAESVVNPPKQAVSVFADTQSSEIKDRIFDEFNSLSVVYQKPSYMFTDKEHRGTFEFADELGNLSISAESSDSVVPAERVEANDKDLLLSTSEKDEGRDPGSNGSVYNAPSYNGSSAPSTTSQPLADLSFPSTGISGQAPASSLAIDDLLGLDFPVGTAVTPSPPPLNLNPKAVLDPGTFQQKWRQLPISLSEEYSLSPQGVASLTTPHALLRHMQSHSIQCIASGGQSPNFKFFFFAQKAEAASMYLVECIINTSSAKSQIKIKADDQSSSQAFSTLFQSALSKFGLP*






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