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Report for Sequence Feature Glyma.04g078200

Feature Type:gene_model
Chromosome:Gm04
Start:6541151
stop:6546684
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g078200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G29150.1AT non-ATPase subunit 9 JGI N/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0043248GO-bp proteasome assembly EnsemblGenomesN/AIEA
GO:0008541GO-cc proteasome regulatory particle, lid subcomplex EnsemblGenomesN/AIEA
GO:0005198GO-mf structural molecule activity EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG1463 KOG 26S proteasome regulatory complex, subunit RPN6/PSMD11 JGI N/AIEA
PTHR10678Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 11/COP9 SIGNALOSOME COMPLEX SUBUNIT 2 JGI N/AIEA
PF01399PFAM PCI domain JGI N/AIEA

Expression Patterns of Glyma.04g078200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g078200
ParalogEvidenceComments
Glyma.06g079600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g078200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08280 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g078200
>Glyma.04g078200.2 sequence-type=transcript locus=Glyma.04g078200 ID=Glyma.04g078200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
AATATTCTGGGCTTTGTAGAGCCCGATTGCTCACTTTGAAACGGTGCGTTTAAACTTTTAAATTGACAATGCTTCTGCGTCGTCGTTTTTTACTCCTCTTCTCTTTGTTAGGGTTTGCACGGTTCCATTTTTTCCCAAACTATACGGCACAGCATCGAAATTTCCCTATACTTGCTTCCGCAAGGAAAGAATTCTACAGTACTCGCCGATAAGGGGTTTTCCAAAGCAGGAGCAATGTCTTCCTCTTATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAAATGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTTTGCGTATGAAAGAGCAAGCAATCACAAACCTCACTAAGCTTCTCACTGATGAAAATAGGGGAGAGGATCTGTGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGGACCTTTCTGAGACAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAAGTTAGGAGATTAGATGACAAGCTTCTTCTTGTGGATATAGATTTGCTGGAAAGCAAGCTGCATTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCACTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAAAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGCCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGAGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTACACAGGCACCTTTCATCCTTGTACGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACCGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCCAAGACTGATGCTATATATCCTGCTACTCTAGAGACCATTTCCAATGTTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGAGCACTCTGGTTATTTTACTCCGATGTCACgttgcttgttgttgctgttgttttcttcttAATTGTGACTAGCTTATCATCTGTTTTTATCTATTTTTATTTTTGTTGAACTCAATTGTGGTAAATCTCTTCCGGTGGCTTTGAacatttaaatgttttggtggtcaatgccacttgtctaaccttggtatcataaaaatacatgtgtGCTGCAAGATTATCTGGTCTTTTAACAGTTTGGACTGGGAGAATTGTTAAAATCTTTAGGCATTAAGCAGGTATATTATGTTGATGTGACTTGGGTTAGTTTCGTGCAACTGAAGTAAATATACCATTAGGTTTGGA
Coding sequences of Glyma.04g078200
>Glyma.04g078200.1 sequence-type=CDS polypeptide=Glyma.04g078200.1.p locus=Glyma.04g078200 ID=Glyma.04g078200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCCTCTTATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAAATGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTTTGCGTATGAAAGAGCAAGCAATCACAAACCTCACTAAGCTTCTCACTGATGAAAATAGGGGAGAGGATCTGTGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGGACCTTTCTGAGACAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAAGTTAGGAGATTAGATGACAAGCTTCTTCTTGTGGATATAGATTTGCTGGAAAGCAAGCTGCATTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCACTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAAAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGCCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGAGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTACACAGGCACCTTTCATCCTTGTACGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACCGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCCAAGACTGATGCTATATATCCTGCTACTCTAGAGACCATTTCCAATGTTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA

>Glyma.04g078200.2 sequence-type=CDS polypeptide=Glyma.04g078200.2.p locus=Glyma.04g078200 ID=Glyma.04g078200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCTTCCTCTTATCTTCCTGCCACAACTGAGTCACTTGCTCTGGCAAATGAGGCCAAAGACCCATCTGAGGCCATCTCCATTCTTTATCGGGTACTTGATGATCCTTCTTCTTCACCAGATGCTTTGCGTATGAAAGAGCAAGCAATCACAAACCTCACTAAGCTTCTCACTGATGAAAATAGGGGAGAGGATCTGTGCAGCCTTCTCACTCAGTTGAGGCCATTCTTCTCCTTGATACCTAAGGCAAAAACTGCAAAGATTGTTAGGGGAATAATTGACTCAGTTGCTAAAATACCAGGGACATCTGATCTACAAATTGCACTCTGCAAAGAAATGGTGCTATGGACTCGTGCTGAAAAGCGGACCTTTCTGAGACAGCGAGTTGAGGCAAGGCTTGCAGCACTTCTGATGGAAAGTAAGGAGTATTCAGAAGCTTTGACTCTTCTTTCTGGCTTGGTCAAAGAAGTTAGGAGATTAGATGACAAGCTTCTTCTTGTGGATATAGATTTGCTGGAAAGCAAGCTGCATTTCTCATTAAGAAACCTTCCAAAGGCAAAAGCTGCACTCACGGCTGCAAGAACAGCTGCAAATGCTATTTATGTGCCCCCAGCTCAACAAGGTGCCATAGATCTGCAGAGTGGAATACTTCATGCTGAAGAAAAGGATTATAAAACTGCTTATAGTTATTTCTTTGAAGCTTTTGAATCATTCAATGCTCTTGATGACCCCAAGGCTGTTTTTAGCCTGAAATATATGTTGCTGTGTAAGATCATGGTGAATCAAGCTGATGACGTAGGAGGAATTATTTCTTCTAAAGCAGGCCTGCAATATCTTGGCCCTGACTTGGATGCTATGAAAGCTGTTGCTGATGCACATTCTAAGCGGTCCCTTAAGTTGTTTGAAATTGCTTTGAGGGACTACAAGGCACAGTTGGAGGAAGACCCAATTGTACACAGGCACCTTTCATCCTTGTACGATACCCTTATGGAGCAGAATCTTTGCAGATTGATCGAGCCTTTCTCAAGGGTTGAGATTGCACATATTGCTGAACTTATTGAACTTCCCACCGATCATGTGGAGCGGAAGTTGTCTCAGATGATTTTGGACAAGAAGTTTGCTGGAACATTGGATCAAGGTGCTGGATGCCTTGTCATATTCGACGATCCCAAGACTGATGCTATATATCCTGCTACTCTAGAGACCATTTCCAATGTTGGGAAAGTCGTGGACAGTCTTTATGTTAGGTCTGCCAAGATAATGGCATGA
Predicted protein sequences of Glyma.04g078200
>Glyma.04g078200.1.p sequence-type=predicted peptide transcript=Glyma.04g078200.1 locus=Glyma.04g078200 ID=Glyma.04g078200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSYLPATTESLALANEAKDPSEAISILYRVLDDPSSSPDALRMKEQAITNLTKLLTDENRGEDLCSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMESKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA*

>Glyma.04g078200.2.p sequence-type=predicted peptide transcript=Glyma.04g078200.2 locus=Glyma.04g078200 ID=Glyma.04g078200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSSSYLPATTESLALANEAKDPSEAISILYRVLDDPSSSPDALRMKEQAITNLTKLLTDENRGEDLCSLLTQLRPFFSLIPKAKTAKIVRGIIDSVAKIPGTSDLQIALCKEMVLWTRAEKRTFLRQRVEARLAALLMESKEYSEALTLLSGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGAIDLQSGILHAEEKDYKTAYSYFFEAFESFNALDDPKAVFSLKYMLLCKIMVNQADDVGGIISSKAGLQYLGPDLDAMKAVADAHSKRSLKLFEIALRDYKAQLEEDPIVHRHLSSLYDTLMEQNLCRLIEPFSRVEIAHIAELIELPTDHVERKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA*






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