SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g075900

Feature Type:gene_model
Chromosome:Gm04
Start:6350666
stop:6354012
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g075900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10700.1AT Peptidyl-tRNA hydrolase II (PTH2) family protein JGI N/AIEA
GO:0004045GO-mf aminoacyl-tRNA hydrolase activity EnsemblGenomesN/AIEA
GO:0004045GO-mf aminoacyl-tRNA hydrolase activity JGI N/AIEA
KOG3305 KOG Uncharacterized conserved protein JGI N/AIEA
PTHR11717Panther LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE JGI N/AIEA
PTHR11717:SF2Panther PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED JGI N/AIEA
PF01981PFAM Peptidyl-tRNA hydrolase PTH2 JGI N/AIEA

Expression Patterns of Glyma.04g075900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g075900
ParalogEvidenceComments
Glyma.06g077100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g075900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g08040 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g075900
>Glyma.04g075900.1 sequence-type=CDS polypeptide=Glyma.04g075900.1.p locus=Glyma.04g075900 ID=Glyma.04g075900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGTTGTTAGGTACTGCACTGTCTATCAGTGTGATTAGGGTTACACTTACCCATTTACGCGCGCCTTCTTTCTCCAACCGGGCGAGTCGACTCAGCTCCAACTCAATGAGTCAATCCGCCGCCACCGCCGACCCCAACGCTATTGCGACAACGAATGACGCGCCGTCGCAGCCTGAAAACGCGGATGTTGTGGTGCAGTACGTGGTGCTCCGGCGAGACCTGATCGACACTTGGCCGCTAGGGAGCGTGGTCACTCAAGGTTGTCACGCTTCTGTTTCGGCCGTTTGGTCCAACAAAGAAGATCCTTTCACCGTTGATTATTGCAGCCCCGATAAAATTGATTCCATGCACAAAGTTACACTTGAAGTAAAGGGAGAACCCCAGATCAAAAACTTGTCTGAGAAGCTTACAGCTGGTGGGATTATTCACAAACTGTGGATTGAACAACCTGAAAACATACCTACGTGCCTTGCCACAAAACCTTACCCCAAGTCAAGCGTTTCTTCGTATTTTAAGAAGTTGAAACTCTGTAAGTGA
Predicted protein sequences of Glyma.04g075900
>Glyma.04g075900.1.p sequence-type=predicted peptide transcript=Glyma.04g075900.1 locus=Glyma.04g075900 ID=Glyma.04g075900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTLLGTALSISVIRVTLTHLRAPSFSNRASRLSSNSMSQSAATADPNAIATTNDAPSQPENADVVVQYVVLRRDLIDTWPLGSVVTQGCHASVSAVWSNKEDPFTVDYCSPDKIDSMHKVTLEVKGEPQIKNLSEKLTAGGIIHKLWIEQPENIPTCLATKPYPKSSVSSYFKKLKLCK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo