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Report for Sequence Feature Glyma.04g071500

Feature Type:gene_model
Chromosome:Gm04
Start:5949695
stop:5955682
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g071500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G33520.1AT actin-related protein 6 JGI N/AIEA
GO:0006338GO-bp chromatin remodeling EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006970GO-bp response to osmotic stress EnsemblGenomesN/AIEA
GO:0008283GO-bp cell proliferation EnsemblGenomesN/AIEA
GO:0009266GO-bp response to temperature stimulus EnsemblGenomesN/AIEA
GO:0009845GO-bp seed germination EnsemblGenomesN/AIEA
GO:0009910GO-bp negative regulation of flower development EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
KOG0680 KOG Actin-related protein - Arp6p JGI N/AIEA
PTHR11937Panther ACTIN JGI N/AIEA
PTHR11937:SF21Panther ACTIN-RELATED PROTEIN 6 JGI N/AIEA
PF00022PFAM Actin JGI N/AIEA

Expression Patterns of Glyma.04g071500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g071500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g07540 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g071500
>Glyma.04g071500.1 sequence-type=CDS polypeptide=Glyma.04g071500.1.p locus=Glyma.04g071500 ID=Glyma.04g071500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGACCTCGACGAACGTGGTAGTCCTGGACAACGGCGGCGGGCTGATCAAGGCGGGCATCGGCGGCGAGCGCGACCCCTCCGCCATAGTCCCGAACTGCCTCTACCGCCCCCCGTCGTCGAAGAAGTGGCTCCACCTCCACTCCGGCGACGAGGACCTCACCTCCGCCGCCGTGCGCCGCCCCATGGACCGCGGCTACCTCATAAACCCCGACCTCCAGCGCGAAATCTGGTCCCACCTCTTCTCTTCCGTCCTCCACATAAACCCTTCCCAGTCCTCGCTCCTCCTCACGGAGCCTCTCTTCACTCCCCCCTCCATCCAGCGCTCGGTGGACGAGCTCGTCTTCGAGGACTTCAACTTCCGGGCCCTGTACGTGGCCCACTCCCCCTCCCTCGTCCACCTCCACGAGGCCAGCCGCAACAACGCCAACGGGCTCCTCTCCAAGGCCCAGTGCAGCCTCGTCCTCGACGCCGGGTTCTCCTTCACCCACGCCTCCCCCGTCTTCCACAACTTCGCCCTCAACTACGCCGTCAAGAGGATCGACCTCGGCGGCAAGGCCCTCACCAACTACCTCAAGGAGCTCGTCTCCTTCCGCTCCGTTAATGTCATGGAAGAGACCTTCATCATCGACGACGTCAAGGAGAAACTCTGCTTTGTCTCACTCGACGTCAACCGCGACCTCACCATCGCCAGGAAGAGTGGGAAAGAGAATCTGTTCAGGTGCACCTACGTGCTTCCGGATGGTGTCACGTACACAAAGGGGTTTGTTAAGTATCCAGATCAGGCGCAGCGATATCTTGCATTGAGGGAGGGTGGCCTTCATTCTTCATCACCAGTGCAAGCGCAGGAGGATGTGAATTTCACGGAAATTGCCGAGCACCCAGAGAACAGGAAGAGAGTTGATTTGACAAAAAATGAATTTGACTTGACAAATGAACGGTTTCTTGTGCCAGAGATGATCTTCCGTCCTGCTGATTTGGGAATGAACCAGGCTGGGCTAGCAGAATGCATTGTACGTGCTGTTAATGCGTGCCATCCACATCTCCGCCCTGTTCTCTATGAAAGCATCATTTTAACTGGTGGAAGCACCTTATTTCCTCAGTTTGCCGAGAGACTAGAGAAGGAGCTTCGGCCTCTAGTTCCTGATGACTATCGTGTGAAGATAACGACTCAAGAAGATCCCATACTAGGTGTTTGGCGTGGAGGTTCACTGTTGGCATCAAGTCCGGATTTTGAAGCTATGTGTGTGACCAAGTCTGAGTATGAGGAGCTTGGTTCTGCTAGATGTCGCAAGAGATTCTTTCATTAA
Predicted protein sequences of Glyma.04g071500
>Glyma.04g071500.1.p sequence-type=predicted peptide transcript=Glyma.04g071500.1 locus=Glyma.04g071500 ID=Glyma.04g071500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSTSTNVVVLDNGGGLIKAGIGGERDPSAIVPNCLYRPPSSKKWLHLHSGDEDLTSAAVRRPMDRGYLINPDLQREIWSHLFSSVLHINPSQSSLLLTEPLFTPPSIQRSVDELVFEDFNFRALYVAHSPSLVHLHEASRNNANGLLSKAQCSLVLDAGFSFTHASPVFHNFALNYAVKRIDLGGKALTNYLKELVSFRSVNVMEETFIIDDVKEKLCFVSLDVNRDLTIARKSGKENLFRCTYVLPDGVTYTKGFVKYPDQAQRYLALREGGLHSSSPVQAQEDVNFTEIAEHPENRKRVDLTKNEFDLTNERFLVPEMIFRPADLGMNQAGLAECIVRAVNACHPHLRPVLYESIILTGGSTLFPQFAERLEKELRPLVPDDYRVKITTQEDPILGVWRGGSLLASSPDFEAMCVTKSEYEELGSARCRKRFFH*






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