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Report for Sequence Feature Glyma.04g069200

Feature Type:gene_model
Chromosome:Gm04
Start:5773063
stop:5776504
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g069200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55190.1AT RAN GTPase 3 JGI N/AIEA
GO:0006913GO-bp nucleocytoplasmic transport EnsemblGenomesN/AIEA
GO:0007264GO-bp small GTPase mediated signal transduction JGI N/AIEA
GO:0015031GO-bp protein transport EnsemblGenomesN/AIEA
GO:0005622GO-cc intracellular JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding JGI N/AIEA
GO:0003724GO-mf RNA helicase activity JGI N/AIEA
GO:0003924GO-mf GTPase activity EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding EnsemblGenomesN/AIEA
GO:0005525GO-mf GTP binding JGI N/AIEA
KOG0096 KOG GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily JGI N/AIEA
PTHR24071Panther FAMILY NOT NAMED JGI N/AIEA
PF00071PFAM Ras family JGI N/AIEA
PWY-5136SoyCyc9 fatty acid β-oxidation II (peroxisome) Plant Metabolic Network ISS
PWY-5138SoyCyc9 unsaturated, even numbered fatty acid β-oxidation Plant Metabolic Network ISS
PWY-561SoyCyc9 superpathway of glyoxylate cycle and fatty acid degradation Plant Metabolic Network ISS
PWY-7036SoyCyc9 very long chain fatty acid biosynthesis II Plant Metabolic Network ISS
GN7V-64576SoyCyc9-rxn enoyl-CoA hydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g069200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g069200
ParalogEvidenceComments
Glyma.06g070600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g069200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g07360 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g069200
>Glyma.04g069200.2 sequence-type=transcript locus=Glyma.04g069200 ID=Glyma.04g069200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CCGCGTTAGGTTAACGCGTTCATTCAAAATACGGAACTTGAAACCCTCCCAATATAAACCCTCGCTTCGTTGTGTGCTCTCTCTTTCTTCTGCATCACTTTCCATTCTCTTCAACCTAACGCAGCATCGCTATACTCTTCATTCCATGGCTTTGCCCAATCAGCAAACCGTGGATTACCCTAGTTTCAAACTCGTTATCGTCGGTGATGGTGGCACAGGAAAGACAACCTTTGTGAAAAGGCATCTCACCGGAGAATTCGAGAAGAAATATGAGCCAACCATCGGTGTGGAGGTTCACCCATTGGATTTTTTCACAAACTGTGGAAAGATTCGATTCTACTGCTGGGATACTGCTGGACAGGAGAAGTTTGGTGGCCTCAGAGATGGATACTATATCCATGGGCAATGTGCTATTATAATGTTTGATGTTACTGCCCGGCTAACATACAAAAATGTTCCCACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATTTCAGCTAAGAGCAACTACAATTTCGAGAAGCCTTTCCTCTATTTGGCCAGGAAACTTGCAGGTGATCCTAATTTGCACTTTGTGGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAGCAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTCCCTGACGATGATGATGAATCTTTTGAGTAGAGGGCTGTTTTTCTGAGTGCGCTGGTATTTGTATGCTACTGTATGTGCTGTTGGGGGTTGTAGTGTTGACATTTTTGGATGCGAATTCGAGGATCTGAATCAATTATCATCCAGATTTGTTGCTTAAATTTAAAACCTCAGTTTAATATATCAACCATGGGCGTTAAAAAGATGAGGATTTGGTTGTTTCGACAAATTTTGGGGTCTTTTAATATACCATGCGAATTGGGGTTTAGCCGATGGAGGGTAGAGTTTGTTCCTTTTTGGGTTTTTTTTTAAAGTTAAACTCGATACTATTGATTAGAAAAATGAGGGTTTATGTTCCTTTTGTCACAGTTTATCACCCAACGTGAAGCAAATCGGTCGATTTCTATATTATTTATTT
Coding sequences of Glyma.04g069200
>Glyma.04g069200.1 sequence-type=CDS polypeptide=Glyma.04g069200.1.p locus=Glyma.04g069200 ID=Glyma.04g069200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACGGAGGTGTGGCAATTTTGGATCTGGGCTGGTGGCGCGACACAACAGAGTGGAAGTTGTAAGGAAAGGTTAACGCGTTCATTCAAAATACGGAACTTGAAACCCTCCCAATATAAACCCTCGCTTCGTTGTGTGCTCTCTCTTTCTTCTGCATCACTTTCCATTCTCTTCAACCTAACGCAGCATCGCTATACTCTTCATTCCATGGCTTTGCCCAATCAGCAAACCGTGGATTACCCTAGTTTCAAACTCGTTATCGTCGGTGATGGTGGCACAGGAAAGACAACCTTTGTGAAAAGGCATCTCACCGGAGAATTCGAGAAGAAATATGAGCCAACCATCGGTGTGGAGGTTCACCCATTGGATTTTTTCACAAACTGTGGAAAGATTCGATTCTACTGCTGGGATACTGCTGGACAGGAGAAGTTTGGTGGCCTCAGAGATGGATACTATATCCATGGGCAATGTGCTATTATAATGTTTGATGTTACTGCCCGGCTAACATACAAAAATGTTCCCACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATTTCAGCTAAGAGCAACTACAATTTCGAGAAGCCTTTCCTCTATTTGGCCAGGAAACTTGCAGGTGATCCTAATTTGCACTTTGTGGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAGCAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTCCCTGACGATGATGATGAATCTTTTGAGTAG

>Glyma.04g069200.2 sequence-type=CDS polypeptide=Glyma.04g069200.2.p locus=Glyma.04g069200 ID=Glyma.04g069200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTTTGCCCAATCAGCAAACCGTGGATTACCCTAGTTTCAAACTCGTTATCGTCGGTGATGGTGGCACAGGAAAGACAACCTTTGTGAAAAGGCATCTCACCGGAGAATTCGAGAAGAAATATGAGCCAACCATCGGTGTGGAGGTTCACCCATTGGATTTTTTCACAAACTGTGGAAAGATTCGATTCTACTGCTGGGATACTGCTGGACAGGAGAAGTTTGGTGGCCTCAGAGATGGATACTATATCCATGGGCAATGTGCTATTATAATGTTTGATGTTACTGCCCGGCTAACATACAAAAATGTTCCCACCTGGCACCGTGATCTTTGCAGGGTCTGTGAAAACATCCCAATTGTTCTTTGCGGTAACAAGGTTGATGTCAAGAACAGGCAAGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAATTTGCAGTACTATGAGATTTCAGCTAAGAGCAACTACAATTTCGAGAAGCCTTTCCTCTATTTGGCCAGGAAACTTGCAGGTGATCCTAATTTGCACTTTGTGGAATCTCCTGCATTGGCTCCACCAGAAGTTCAAATTGATTTAGCTGCACAGCAACAGCACGAGGCTGAGCTTCTTGCAGCTGCTAGTCAGCCCCTCCCTGACGATGATGATGAATCTTTTGAGTAG
Predicted protein sequences of Glyma.04g069200
>Glyma.04g069200.1.p sequence-type=predicted peptide transcript=Glyma.04g069200.1 locus=Glyma.04g069200 ID=Glyma.04g069200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTEVWQFWIWAGGATQQSGSCKERLTRSFKIRNLKPSQYKPSLRCVLSLSSASLSILFNLTQHRYTLHSMALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDESFE*

>Glyma.04g069200.2.p sequence-type=predicted peptide transcript=Glyma.04g069200.2 locus=Glyma.04g069200 ID=Glyma.04g069200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQIDLAAQQQHEAELLAAASQPLPDDDDESFE*






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