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Report for Sequence Feature Glyma.04g067600

Feature Type:gene_model
Chromosome:Gm04
Start:5643933
stop:5648860
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g067600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G11200.1AT DEAD/DEAH box RNA helicase family protein JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006406GO-bp mRNA export from nucleus EnsemblGenomesN/AIEA
GO:0006974GO-bp cellular response to DNA damage stimulus EnsemblGenomesN/AIEA
GO:0010468GO-bp regulation of gene expression EnsemblGenomesN/AIEA
GO:0010501GO-bp RNA secondary structure unwinding EnsemblGenomesN/AIEA
GO:0005681GO-cc spliceosomal complex EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding JGI N/AIEA
GO:0004004GO-mf ATP-dependent RNA helicase activity EnsemblGenomesN/AIEA
GO:0004386GO-mf helicase activity JGI N/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0008026GO-mf ATP-dependent helicase activity JGI N/AIEA
KOG0329 KOG ATP-dependent RNA helicase JGI N/AIEA
PTHR24031Panther FAMILY NOT NAMED JGI N/AIEA
PTHR24031:SF5Panther JGI N/AIEA
PF00270PFAM DEAD/DEAH box helicase JGI N/AIEA
PF00271PFAM Helicase conserved C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.04g067600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g067600
ParalogEvidenceComments
Glyma.06g069200 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g067600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g07180 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g067600
>Glyma.04g067600.2 sequence-type=transcript locus=Glyma.04g067600 ID=Glyma.04g067600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTCACTCGCTCATCCACTGGAGGTTTCGCTCTCTCAGTTTCTTTTCCCCAAATTGTTTTTCATCTAACAATTTACTTTGCAGAACCCTAACCCTAGCCCCTTCGCCTACCTTGTAACCTTCCTTTCGATCCTTCATCTCGCAGACAATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAGATTTTTTTGGGAGCAATGTTAGATGCTTGGTGGCATGAGTAATAGTGACGCATGGTAATTTGAACGGTGCAGCTGGATGATTAACCGGTGCTGATAGACACCAGAGTCTGTCTACAGACTGCCATTTTACCATTGGATATTTATCGGTATTATTAGATAGCAGCAGTGTAATGGCTTATGCATTTATGTGGTTTCACTTACTGTATCCTGTGTGGCAGCTACGCTGTTTTCATGAACGTCATGTTTTGAGTTAGTCTTACTGCGACTTTGATACTTGATACTTCTGTTGAATTCGATACGTGGTCTTCGATTTAAATTTCATAGTTTTTACTTCTCAGTCT
Coding sequences of Glyma.04g067600
>Glyma.04g067600.1 sequence-type=CDS polypeptide=Glyma.04g067600.1.p locus=Glyma.04g067600 ID=Glyma.04g067600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAG

>Glyma.04g067600.2 sequence-type=CDS polypeptide=Glyma.04g067600.2.p locus=Glyma.04g067600 ID=Glyma.04g067600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGTGAAACTAAGGACGAAGCATACGAGGAAGAGCTTCTCGATTACGAGGAGGAAGACGACAAGGCCCCCGACTCCGCCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCGGGATTTAGGGACTTCCTTCTGAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCATCTGAAGTGCAACATGAGTGCATACCTCAAGCAATTCTCGGGATGGATGTAATTTGTCAAGCAAAATCTGGGATGGGAAAGACTGCTGTTTTTGTTCTGTCGACTCTGCAGCAGATTGATCCTGTTCCTGGCCAAGTTTCTGCACTTGTTCTTTGTCATACAAGAGAATTAGCATACCAGATATGCCATGAGTTCGAGAGGTTTAGCACCTACTTGCCAGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTTGGAACACCGGGAAGAATACTGGCATTGACCAGGGATAAGGACCTTTCTTTAAAGAATGTTAGACATTTCATATTGGATGAATGCGACAAGATGCTGGAATCATTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTCTCAGCAACACTCAGCAAGGAAATTCGCCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCCAAGTTGACACTTCACGGGCTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAAAAGAATCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTGATCTTCGTGAAAAGTGTTAGCAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGCTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTTGTTGCAACAGATTTGGTTGGAAGAGGGATTGATATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCCGCAGACACATACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCTTGTTCTACTGATGTCGATGTTCTCAACAATGTTCAGTCTAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTATATGCCATCGTAG
Predicted protein sequences of Glyma.04g067600
>Glyma.04g067600.1.p sequence-type=predicted peptide transcript=Glyma.04g067600.1 locus=Glyma.04g067600 ID=Glyma.04g067600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGETKDEAYEEELLDYEEEDDKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS*

>Glyma.04g067600.2.p sequence-type=predicted peptide transcript=Glyma.04g067600.2 locus=Glyma.04g067600 ID=Glyma.04g067600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGETKDEAYEEELLDYEEEDDKAPDSAGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS*






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