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Report for Sequence Feature Glyma.04g067100

Feature Type:gene_model
Chromosome:Gm04
Start:5607262
stop:5610021
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g067100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G52570.1AT phospholipase D alpha 2 JGI N/AIEA
PTHR18896Panther PHOSPHOLIPASE D JGI N/AIEA
PTHR18896:SF11Panther PHOSPHOLIPASE D JGI N/AIEA
LIPASYN-PWYSoyCyc9 phospholipases Plant Metabolic Network ISS
PWY-3561SoyCyc9 choline biosynthesis III Plant Metabolic Network ISS
PWY-4762SoyCyc9 superpathway of choline biosynthesis Plant Metabolic Network ISS
PWY-7039SoyCyc9 phosphatidate metabolism, as a signaling molecule Plant Metabolic Network ISS
GN7V-42004SoyCyc9-rxn phospholipase D Plant Metabolic Network ISS

Expression Patterns of Glyma.04g067100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g067100 not represented in the dataset
Glyma.04g067100 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g067100
ParalogEvidenceComments
Glyma.06g068600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g067100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.04g067100
>Glyma.04g067100.1 sequence-type=CDS polypeptide=Glyma.04g067100.1.p locus=Glyma.04g067100 ID=Glyma.04g067100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCGGCATTTGCTGCACGGGAGGCTCGATGTGATCATACGTGAGATCGACACATTACCAAGTCTTAACGAGTGGAATTTCAATCTCTGCTGCAAGGAACTTTATTTACATATAACTGGTTGGTCTGTGTACACTGAAATAACCTTGATTAGGGACCCAATGAAGCCTAGAACAAGAATCACCCTTGGGGAACTGCCCAAGATGAAAGCTGAGGAAGGTGTTAAGGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTGCTAGATTTCAAGAAAAATGGCTTGATGGCAGCTCATGATCAAGAAACTGCTGATTACTTCAAAAACAAAAAGGTGAATTGTGTTTTGTGTCCACGGAACCCGGATGATGGGAAAAGCATAGTGCAAGGTTTTGAAACTTCAACAATCCAAGTTGCTGGTGCTGCTACGGGACAACAAGGACAAAAGAGAACAATATTAAGTTTTGTAGGTGGCATTGATCTTTGTGATGGGAGATATGATATTCAGGAACATCCTCTATTTTCAACTTTGGATACAGTGCATAAAGATGATTTCCATCAGCCAAATTTCTCTGGTGCTTCCATCAAGAAAGAAGGGTCTGTTGCTTGGGATGTTTTGCTCAATTTTCAACAAAGGTGGGAGAAGCAGGTTGGGAATCAGCTCCTATTCTCTTCAAGCAAGCTTGATGAGTACTTTGTCCCTCGATCCACGGTGGCAACAACAAATGAAAATGAGACATGGAATGTTCAGTTGTTCAGATCCATTGATGGTGGTGCTGCTTCTGGCTTCCCCCAAGATCCCGAAGACGCGGCTGAATTAGGCCTTGTTAGTGGGAAAGATAACATCACTGATAGAAGCATTCATGATGCTTATATAAATGCTATTCGACGTGCCAAAAACTTTATCTACACTGAAAACCATTTCGTAAGGAGTTCACATGGTTGGCAAGCATATGAAATTGGGATTGATATTCGAAAAAACCCAAACCCCACTTTGATTAAAGATAAAATCAAGATAGAATATATAAGTGAGAGATTAGTTAGTTTTTAG
Predicted protein sequences of Glyma.04g067100
>Glyma.04g067100.1.p sequence-type=predicted peptide transcript=Glyma.04g067100.1 locus=Glyma.04g067100 ID=Glyma.04g067100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MRHLLHGRLDVIIREIDTLPSLNEWNFNLCCKELYLHITGWSVYTEITLIRDPMKPRTRITLGELPKMKAEEGVKVLMLVWDDRTSVLDFKKNGLMAAHDQETADYFKNKKVNCVLCPRNPDDGKSIVQGFETSTIQVAGAATGQQGQKRTILSFVGGIDLCDGRYDIQEHPLFSTLDTVHKDDFHQPNFSGASIKKEGSVAWDVLLNFQQRWEKQVGNQLLFSSSKLDEYFVPRSTVATTNENETWNVQLFRSIDGGAASGFPQDPEDAAELGLVSGKDNITDRSIHDAYINAIRRAKNFIYTENHFVRSSHGWQAYEIGIDIRKNPNPTLIKDKIKIEYISERLVSF*






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