SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g064300

Feature Type:gene_model
Chromosome:Gm04
Start:5332988
stop:5338521
Source:JGI
Version:Wm82.a4.v1
High confidence:yes



Annotations for Glyma.04g064300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15170.1AT TDP1 JGI N/AIEA
3.1.4.1EC phosphodiesterase I JGI N/AIEA
GO:0006281GO-bp DNA repair JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0008081GO-mf phosphoric diester hydrolase activity JGI N/AIEA
K10862KEGG DNA repair and recombination proteins JGI N/AIEA
KOG2031 KOG Tyrosyl-DNA phosphodiesterase JGI N/AIEA
PTHR12415PantherFam TYROSYL-DNA PHOSPHODIESTERASE 1 JGI N/AIEA
PTHR12415:SF0PantherFam TYROSYL-DNA PHOSPHODIESTERASE 1 JGI N/AIEA
PF00498Pfam FHA domain JGI N/AIEA
PF06087Pfam Tyrosyl-DNA phosphodiesterase JGI N/AIEA

Gene model name correspondences to Glyma.04g064300 Gene Call Version Wm82.a4.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06820 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g064300
>Glyma.04g064300.1 sequence-type=CDS polypeptide=Glyma.04g064300.1.p locus=Glyma.04g064300 id=Glyma.04g064300.1.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTTTGTCTCCTCAGGTTGGATACTTGGTTCCACTAAATCGAAATTTTAAGGAAGAAGCTTCAGTTCCCAAGTTTGCTGTCTCAGATGGCATAAACGTTATTGGGCGTAACAACATTCCTGTCCCCGACAAGAGGCTTAGCCGCAAACACCTTACTTTAACTGCTTCTCCCAATGGCTCGGCTAGTTTGCTCGTCGAGGGGACGAACCCAATTGTTGTTAATTCTGGGAATAAGAGAAGGAAGCTGAATCCTAAAGAAGAAGCTACCATTTGCAATGGTGATATAATCGAGCTTATTCCCGGTCACCATCTTTTCAAATATCAGGTGTTGGGTGGTGATGGAAAATCTTCAACTTGTAGAAACAACGAAGCTCAATCATCATTCAAAAACAAAGCTTCAGGCAGGAGTTCCCAGGATAAGGTTGAAACAAGCAGCCAGAAACAAGGAAGGAATGCAGACGCACGGAAGTCGTCGGGTGAAGACAATAGTGTGGAGGCCATTCGTAATTTCCATGTCCCTAGTGACCAAATACCTTCCACTTTTCGACTTTTGCACGTGCAAGGGTTACCACCTTGGGCAAATACTTCTTGTGTTTCTATAGGTGATGTTATTCAGGGAGATATTAAAGTTGCTATTCTTTCAAACTACATGGTAGACATTGATTGGTTGGTTCCTGCATGTCCTGCACTTTCAAAAGTGCCCCATGTGCTAGTTATTCATGGAGAAAGTGATGGGAGGGTGGATTACATAAAGAGAAGCAAACCTGCAAACTGGATTCTGCACAAACCATCATTGCCAATTTCCTTTGGGACACATCATTCAAAGGCTATGATGCTTATATATCCTCAAGGAGTGAGAGTCATTGTGCATACAGCGAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCTGAGCAAGGGATCTGGATTTGAAAATGACCTGGTTGAATATCTCAGTGTGTTGAAGTGGCCAGAATTCTCAGTTAACCTTCCATTCCTTGGAAGCGTCAGTATATGTCCATCTTTCTTCAGGAAGTTTGATTATAGTGATGCAAGGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTTCTAGTTTGAAAAAGTGGGGACATATGAAGCTGCGATCTCTGCTCCAGGAGTGTACTTTTGATGAAGAGTTTAAGAAATCTCCACTTGTTTATCAGTTCTCTTCTCTTGGCTCTTTGGATGAAAAATGGATGACTGAGCTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGACAAAACACCCCTTGGTATGGGGGAGCCTCAAATCATATGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAGTTCCAAGTCCTCTGAAGAATGTGGAGAAAACATTTTTGAAGAAGTATTGGGCAAAATGGAAAGCAGACCATACTGGACGCTGCCGTGCTATGCCACATATAAAGACTTTTGCTCGTTACAAAAATCAGAGTCTTGCTTGGTTCTTGTTAACCTCGGCAAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCGTTCATATGAGCTGGGAGTACTATTTTTACCATCATTATTCAAACGACACGAATCTGTATTTTCCTGTACCAGTAATGTTACAGTATCTGAGGATAAATGCCCAGCCCGAGAATCTTCTGAGATGAAGAAAACAAAACTAGTAACCCTGACTGGGATTAAAAAGGAGAGTATGCATTCATCATCTGAAGTTATTATCCCTTTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCAAGATATCCCCTGGTCTTGGGACCGGCAATATAACAAGAAAGATGTCTATGGTCATGTTTGGCCACGGATGTGA

>Glyma.04g064300.4 sequence-type=CDS polypeptide=Glyma.04g064300.4.p locus=Glyma.04g064300 id=Glyma.04g064300.4.Wm82.a4.v1 annot-version=Wm82.a4.v1
ATGTCTTTGTCTCCTCAGGTTGGATACTTGGTTCCACTAAATCGAAATTTTAAGGAAGAAGCTTCAGTTCCCAAGTTTGCTGTCTCAGATGGCATAAACGTTATTGGGCGTAACAACATTCCTGTCCCCGACAAGAGGCTTAGCCGCAAACACCTTACTTTAACTGCTTCTCCCAATGGCTCGGCTAGTTTGCTCGTCGAGGGGACGAACCCAATTGTTGTTAATTCTGGGAATAAGAGAAGGAAGCTGAATCCTAAAGAAGAAGCTACCATTTGCAATGGTGATATAATCGAGCTTATTCCCGGTCACCATCTTTTCAAATATCAGGTGTTGGGTGGTGATGGAAAATCTTCAACTTGTAGAAACAACGAAGCTCAATCATCATTCAAAAACAAAGCTTCAGGCAGGAGTTCCCAGGATAAGGTTGAAACAAGCAGCCAGAAACAAGGAAGGAATGCAGACGCACGGAAGTCGTCGGGTGAAGACAATAGTGTGGAGGCCATTCGTAATTTCCATGTCCCTAGTGACCAAATACCTTCCACTTTTCGACTTTTGCACGTGCAAGGGTTACCACCTTGGGCAAATACTTCTTGTGTTTCTATAGGTGATGTTATTCAGGGAGATATTAAAGTTGCTATTCTTTCAAACTACATGGTAGACATTGATTGGTTGGTTCCTGCATGTCCTGCACTTTCAAAAGTGCCCCATGTGCTAGTTATTCATGGAGAAAGTGATGGGAGGGTGGATTACATAAAGAGAAGCAAACCTGCAAACTGGATTCTGCACAAACCATCATTGCCAATTTCCTTTGGGACACATCATTCAAAGGCTATGATGCTTATATATCCTCAAGGAGTGAGAGTCATTGTGCATACAGCGAACTTAATTTATGTAGATTGGAACAATAAAAGCCAAGGTTTGTGGATGCAAGATTTTCCATGGAAAGATCAAAATAGTCTGAGCAAGGGATCTGGATTTGAAAATGACCTGGTTGAATATCTCAGTGTGTTGAAGTGGCCAGAATTCTCAGTTAACCTTCCATTCCTTGGAAGCGTCAGTATATGTCCATCTTTCTTCAGGAAGTTTGATTATAGTGATGCAAGGGTTAGATTAATTGCATCTGTACCTGGATATCATTCTGGTTCTAGTTTGAAAAAGTGGGGACATATGAAGCTGCGATCTCTGCTCCAGGAGTGTACTTTTGATGAAGAGTTTAAGAAATCTCCACTTGTTTATCAGTTCTCTTCTCTTGGCTCTTTGGATGAAAAATGGATGACTGAGCTGGCATCATCAATGTCAGCAGGTCTCTCTGAAGACAAAACACCCCTTGGTATGGGGGAGCCTCAAATCATATGGCCTACTGTAGAAGATGTCAGATGCTCTTTAGAGGGCTATGCTGCTGGAAATGCAGTTCCAAGTCCTCTGAAGAATGTGGAGAAAACATTTTTGAAGAAGTATTGGGCAAAATGGAAAGCAGACCATACTGGACGCTGCCGTGCTATGCCACATATAAAGACTTTTGCTCGTTACAAAAATCAGAGTCTTGCTTGGTTCTTGTTAACCTCGGCAAATCTTAGCAAAGCTGCCTGGGGAGCTCTCCAGAAGAATAATACTCAGTTGATGATTCGTTCATATGAGGATAAATGCCCAGCCCGAGAATCTTCTGAGATGAAGAAAACAAAACTAGTAACCCTGACTGGGATTAAAAAGGAGAGTATGCATTCATCATCTGAAGTTATTATCCCTTTACCTTTGCCTTACGAGCTCCCTCCCCTGCCTTATTCTTCCCAAGATATCCCCTGGTCTTGGGACCGGCAATATAACAAGAAAGATGTCTATGGTCATGTTTGGCCACGGATGTGA
Predicted protein sequences of Glyma.04g064300
>Glyma.04g064300.1.p sequence-type=predicted peptide transcript=Glyma.04g064300.1 locus=Glyma.04g064300 id=Glyma.04g064300.1.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSLSPQVGYLVPLNRNFKEEASVPKFAVSDGINVIGRNNIPVPDKRLSRKHLTLTASPNGSASLLVEGTNPIVVNSGNKRRKLNPKEEATICNGDIIELIPGHHLFKYQVLGGDGKSSTCRNNEAQSSFKNKASGRSSQDKVETSSQKQGRNADARKSSGEDNSVEAIRNFHVPSDQIPSTFRLLHVQGLPPWANTSCVSIGDVIQGDIKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGESDGRVDYIKRSKPANWILHKPSLPISFGTHHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNSLSKGSGFENDLVEYLSVLKWPEFSVNLPFLGSVSICPSFFRKFDYSDARVRLIASVPGYHSGSSLKKWGHMKLRSLLQECTFDEEFKKSPLVYQFSSLGSLDEKWMTELASSMSAGLSEDKTPLGMGEPQIIWPTVEDVRCSLEGYAAGNAVPSPLKNVEKTFLKKYWAKWKADHTGRCRAMPHIKTFARYKNQSLAWFLLTSANLSKAAWGALQKNNTQLMIRSYELGVLFLPSLFKRHESVFSCTSNVTVSEDKCPARESSEMKKTKLVTLTGIKKESMHSSSEVIIPLPLPYELPPLPYSSQDIPWSWDRQYNKKDVYGHVWPRM*

>Glyma.04g064300.4.p sequence-type=predicted peptide transcript=Glyma.04g064300.4 locus=Glyma.04g064300 id=Glyma.04g064300.4.p.Wm82.a4.v1 annot-version=Wm82.a4.v1
MSLSPQVGYLVPLNRNFKEEASVPKFAVSDGINVIGRNNIPVPDKRLSRKHLTLTASPNGSASLLVEGTNPIVVNSGNKRRKLNPKEEATICNGDIIELIPGHHLFKYQVLGGDGKSSTCRNNEAQSSFKNKASGRSSQDKVETSSQKQGRNADARKSSGEDNSVEAIRNFHVPSDQIPSTFRLLHVQGLPPWANTSCVSIGDVIQGDIKVAILSNYMVDIDWLVPACPALSKVPHVLVIHGESDGRVDYIKRSKPANWILHKPSLPISFGTHHSKAMMLIYPQGVRVIVHTANLIYVDWNNKSQGLWMQDFPWKDQNSLSKGSGFENDLVEYLSVLKWPEFSVNLPFLGSVSICPSFFRKFDYSDARVRLIASVPGYHSGSSLKKWGHMKLRSLLQECTFDEEFKKSPLVYQFSSLGSLDEKWMTELASSMSAGLSEDKTPLGMGEPQIIWPTVEDVRCSLEGYAAGNAVPSPLKNVEKTFLKKYWAKWKADHTGRCRAMPHIKTFARYKNQSLAWFLLTSANLSKAAWGALQKNNTQLMIRSYEDKCPARESSEMKKTKLVTLTGIKKESMHSSSEVIIPLPLPYELPPLPYSSQDIPWSWDRQYNKKDVYGHVWPRM*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo