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Report for Sequence Feature Glyma.04g062500

Feature Type:gene_model
Chromosome:Gm04
Start:5158262
stop:5163060
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g062500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25180.1AT response regulator 12 JGI N/AIEA
GO:0000160GO-bp phosphorelay signal transduction system EnsemblGenomesN/AIEA
GO:0000160GO-bp phosphorelay signal transduction system JGI N/AIEA
GO:0006351GO-bp transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated EnsemblGenomesN/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0007165GO-bp signal transduction EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000156GO-mf phosphorelay response regulator activity JGI N/AIEA
GO:0003677GO-mf DNA binding EnsemblGenomesN/AIEA
GO:0003682GO-mf chromatin binding JGI N/AIEA
GO:0003700GO-mf DNA binding transcription factor activity EnsemblGenomesN/AIEA
PTHR26402Panther RESPONSE REGULATOR OF TWO-COMPONENT SYSTEM JGI N/AIEA
PTHR26402:SF38Panther JGI N/AIEA
PF00072PFAM Response regulator receiver domain JGI N/AIEA
PF00249PFAM Myb-like DNA-binding domain JGI N/AIEA

Expression Patterns of Glyma.04g062500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g062500
ParalogEvidenceComments
Glyma.06g063500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g062500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06650 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g062500
>Glyma.04g062500.1 sequence-type=CDS polypeptide=Glyma.04g062500.1.p locus=Glyma.04g062500 ID=Glyma.04g062500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCGTAGAGAAGAAAAGGAATGATTCCGGCGACGAGTTCCCCGTCGGAATGCGTGTTCTTGCCGTCGATGATGACCCCACTTGCCTCTTGGTTCTGAAAACTCTCCTCCAAAGATGTCAATATCATGTAACCACGACTAATCAAGCAATAAAGGCGTTGGCTCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATCAGTGATGTACACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGATGGTGATGAAGGGGATTTCTCATGGGGCCTGTGATTATCTGCTGAAACCTGTGAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCAGCAACCTAGACAAACCTACTTCTAATAGTGGAAATGGACTAGGGTCATCAGGAACAGGAAATTCTGATCAAAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGATGAAGATGAGGATCAGGAGAATGATCTTGACAATGAGGACCCATCAGCCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGACCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTTGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTTCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAACAAGCCAATATGGTGGCGGCCTTAGGGGTTGCAGATCCATCCTATTTGAGAATGAGTTCGGTGAGCGGGGTTGGACATGTACAAACATTAAGTGGTTCCGGACAGCTTCATAACAATAATTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAACACTCCTGCTGGTTTGAATGTGCATGGATTTCCTTCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAACAATGCCAATGATCATCATAAATTCCAGTCAGTCATTGTTCCTGTTAATCAGAATGGTGTTCAGGGAATGACAGTGTCTGTAGGGCTTGATCAACTGCAAAACAATAAGGTTGTTATGTCTGTTCAGAACCTGACCACTGTTTTTGATGCCAAAACAACTTTTCCTATCCCAAATAAACTCCCAGATCCAAGACCAAAAATAACCAACTCTGTCTCTCATACTTCAGATGTGCATTTCTCAAACAATGCCTTGATGTTGGAACCACGCCCTCAAGGCTCACAAGGGAGTGTAAGAATTGGAACATTATCTTCTTCAGTAGCCTCTCAACATTCGGAATTTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGACAAGTGCTGTGCAGCCATCTGTGATCCAGACAAACTTTTTCCCTCCAAGTGAATGTTTTAGACAGACTAATATACCTCCTGCAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCTAAGTGGTCCATCCATCACTTCATTGTCCAGGCAATCCCATGATTCAATGACAGAAATGCACTCTGAAGGAATGACTTTTACTAACAGACCTGGGCATACAAGCAGTAATGTGCCATTTCAAGGGTGGGATGACCATAATCAGGATGCTACTCACCATTCAAATATTATGTCAATAAACTCACTGACTCCAGTCAATGGGGCTGCTGTTCAAGCTGGCCATGCAGCAACGAACTCGGTCTTACACAGAAACTTGGATTTTAATTATTGTGATCCCTTACAAATGAAGCATGAAGGGTTTGTGGAGTTAACTGATGAGACCTTATTGAAACAACATCAGGGGAATACCATGGACCAGCAAAAATCTCAAGAAAATCATTTCTCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAATAG
Predicted protein sequences of Glyma.04g062500
>Glyma.04g062500.1.p sequence-type=predicted peptide transcript=Glyma.04g062500.1 locus=Glyma.04g062500 ID=Glyma.04g062500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTVEKKRNDSGDEFPVGMRVLAVDDDPTCLLVLKTLLQRCQYHVTTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKMVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTSNLDKPTSNSGNGLGSSGTGNSDQNEKLTKKRKDQDEDEDEDQENDLDNEDPSAQKKPRVVWSVDLHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVAALGVADPSYLRMSSVSGVGHVQTLSGSGQLHNNNFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLNNANDHHKFQSVIVPVNQNGVQGMTVSVGLDQLQNNKVVMSVQNLTTVFDAKTTFPIPNKLPDPRPKITNSVSHTSDVHFSNNALMLEPRPQGSQGSVRIGTLSSSVASQHSEFSLSLLDQGRYSDNWTSAVQPSVIQTNFFPPSECFRQTNIPPADNMASVPLQGGNLSGPSITSLSRQSHDSMTEMHSEGMTFTNRPGHTSSNVPFQGWDDHNQDATHHSNIMSINSLTPVNGAAVQAGHAATNSVLHRNLDFNYCDPLQMKHEGFVELTDETLLKQHQGNTMDQQKSQENHFSNNLGSLEDLVSSMMK*






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