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Report for Sequence Feature Glyma.04g062300

Feature Type:gene_model
Chromosome:Gm04
Start:5130132
stop:5132039
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g062300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G32070.1AT Polynucleotidyl transferase, ribonuclease H-like superfamily protein JGI N/AIEA
GO:0017148GO-bp negative regulation of translation EnsemblGenomesN/AIEA
GO:0043928GO-bp exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay EnsemblGenomesN/AIEA
GO:0090503GO-bp RNA phosphodiester bond hydrolysis, exonucleolytic EnsemblGenomesN/AIEA
GO:0000932GO-cc P-body EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0030015GO-cc CCR4-NOT core complex EnsemblGenomesN/AIEA
GO:0003676GO-mf nucleic acid binding EnsemblGenomesN/AIEA
GO:0004535GO-mf poly(A)-specific ribonuclease activity EnsemblGenomesN/AIEA
KOG0304 KOG mRNA deadenylase subunit JGI N/AIEA
PTHR10797Panther CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT JGI N/AIEA
PF04857PFAM CAF1 family ribonuclease JGI N/AIEA

Expression Patterns of Glyma.04g062300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g062300
ParalogEvidenceComments
Glyma.06g063300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g062300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06620 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g062300
>Glyma.04g062300.2 sequence-type=transcript locus=Glyma.04g062300 ID=Glyma.04g062300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CAGATGTTAACGACTGATATCACATTGTCGCATCCCGAATTGCAAGAGCCCAGTTGTAAACGACACCTCCCGTGTAGTTGTTGCTGACCAAAACGACCCCACGCCCCATCCCCAGTACAAATCAGGTCTCAACCCCTCGCCCCCAACTTCCTGTCGCTTCCCCTTCTTCGCTCCCCCCCCGCTCGTTgacctccgattctcccctcatcggagctcaaatctccgatcCCTCCCTTCATATCGCTTCACGGCAACCTTCTCTTCACCCATCGCAAGATCTAGTTGAATCTCGACCGGTTCGAAGCTCTACTCACTCAAATCCTCTTCAGATCTGGGGGGTTTGATTGCAATTCTCACTCTGCTGCTCGGATTTGTTCGTTTGAAATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTaattgaaattgaaagagaaaaagaaaaaaggaaagaagaatataattggatgtagaGTACGTTTTAAGTGTGAGTCTCTTTTTACTTCGTGTACACTTCTGCCAAAAAATGGTTGTTGTTTACTTGTAACATTTTCATCATCATCCTTGCTTGAACTGTAACTCAAACCCTAGCTGGTTTTGTTAGCTTGAGTTCTTTGTAAATCATCACTTCAGTTTAGTGTTTCAAATTTAAATAATAACTTATATGATGATTCCCTTAGTTTGCTTTGCTGCAGCTATTTGTTTCTTGTAATCTTTGCTCAACTTATAATCAATACCAACAACACTGTTCTCTGATTTCTGAAGATGTTTAGCCCAATTCTTAGTTCTAATAAGAAGTCGTGTTTCTGTGTCTGTAAGTGTGATTGTTCTGGGTTGACTGGGTGAAATACCATACGGGTCCTT
Coding sequences of Glyma.04g062300
>Glyma.04g062300.1 sequence-type=CDS polypeptide=Glyma.04g062300.1.p locus=Glyma.04g062300 ID=Glyma.04g062300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTAATTGA

>Glyma.04g062300.2 sequence-type=CDS polypeptide=Glyma.04g062300.2.p locus=Glyma.04g062300 ID=Glyma.04g062300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAACCTCGAGGAGGAGTTCGCGTTGATCCGCGAAATCGTCGACGAGTATAACTACGTGGCGATGGATACCGAGTTCCCTGGCGTGGTTCTCCGTCCGGTGGGGAATTTCAAGAACATCAACGACTACAACTACCAAACCTTGAAGGACAACGTGGACATGTTGAAGCTGATCCAATTAGGTCTCACCTTCTCCGACGAAAACGGGAACCTTCCCACCTGCGGCACGGAGAGCCCCTGCATCTGGCAATTCAACTTCCGCGAGTTCAACGTCAGCGAAGACATCTTCGCGAGCGACTCGATCGAGCTGTTGCGCCAGTGCGGAATCGACTTCAAGAAGAACAGCGAGAATGGAATCGACGTGAACCGGTTCGGGGAGCTCCTCATGTCCTCCGGGATCGTGTTGAACGACTCCGTGCGCTGGGTTACCTTCCACAGCGGCTACGATTTCGGCTACCTCCTGAAGCTGTTGACATGCCGGAGCTTGCCGGACACGCAGGCCGGGTTCTTCGATCTGATCAAGATGTATTTTCCGATGGTATATGATATCAAGCACCTGATGAAGTTCTGCAACAGCCTCCATGGAGGGTTGAACAAGCTCGCGGAGTTGTTGGAGGTGGAGAGGGTTGGCGTCTGCCATCAGGCTGGGTCTGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACGTTCTTCAGTGGCTCCACGGAGAAATATGCTGGTGTCTTGTATGGTTTAGGGGTTGAGAGTGGACAGACTAATTGA
Predicted protein sequences of Glyma.04g062300
>Glyma.04g062300.1.p sequence-type=predicted peptide transcript=Glyma.04g062300.1 locus=Glyma.04g062300 ID=Glyma.04g062300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNVSEDIFASDSIELLRQCGIDFKKNSENGIDVNRFGELLMSSGIVLNDSVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVESGQTN*

>Glyma.04g062300.2.p sequence-type=predicted peptide transcript=Glyma.04g062300.2 locus=Glyma.04g062300 ID=Glyma.04g062300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MSILPKGDSVQIREVWNDNLEEEFALIREIVDEYNYVAMDTEFPGVVLRPVGNFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTESPCIWQFNFREFNVSEDIFASDSIELLRQCGIDFKKNSENGIDVNRFGELLMSSGIVLNDSVRWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKMYFPMVYDIKHLMKFCNSLHGGLNKLAELLEVERVGVCHQAGSDSLLTSCTFRKLRDTFFSGSTEKYAGVLYGLGVESGQTN*






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