SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma.04g061900

Feature Type:gene_model
Chromosome:Gm04
Start:5091277
stop:5095032
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g061900
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G25110.1AT stromal cell-derived factor 2-like protein precursor JGI N/AIEA
GO:0006486GO-bp protein glycosylation EnsemblGenomesN/AIEA
GO:0097502GO-bp mannosylation EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane EnsemblGenomesN/AIEA
GO:0016020GO-cc membrane JGI N/AIEA
GO:0000030GO-mf mannosyltransferase activity EnsemblGenomesN/AIEA
KOG3358 KOG Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains JGI N/AIEA
PTHR10050Panther DOLICHYL-PHOSPHATE-MANNOSE--PROTEIN MANNOSYLTRANSFERASE JGI N/AIEA
PTHR10050:SF6Panther JGI N/AIEA
PF02815PFAM MIR domain JGI N/AIEA

Expression Patterns of Glyma.04g061900
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g061900 not represented in the dataset
Glyma.04g061900 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g061900
ParalogEvidenceComments
Glyma.06g062900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g061900 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06581 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g061900
>Glyma.04g061900.2 sequence-type=transcript locus=Glyma.04g061900 ID=Glyma.04g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GCAGAAAGGTCCATTGCATTGCAGTGTAAGTATTTACAAAGCAAAGCGAAGCAAGCATTCACTGAATGCGCTCTATCTCTCTCTTTCGATCTGGGTACTAACCCTAACCCGCTTCGAACCGTGGCTTCCTCAGGCTCGCAGAACCTCTCTCGAAGAAAACcttcttcttcttcgtcttcgtcttctCAACAAACACCCGGGTCGACCCGGATCGTTTACCGAGAATCTCGGATCCCATCGGAATCCGATTTCCCGATCTGGCAGCAGAACTGGTTCATCGCATTGCTCTTCGTCATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGAGTTACTTAGTATCGATACTTATTCTAAACGGGTAAACCATGGATAGTGGGAGTGGGTGGCTGGCACCGGTTCTGATAACAAATGCAGGTTTTTCTATTGAAGGATAAATATACAGGAGCATTTAGGATTAGATAACGGTAGTAATATTTTGTCATAGGTACACTTTGTTATGTAGTAAGTGCATGCCCCATTTTCATTTTCCCCGCTGAAAATACTTGGTGTCTGTTGTTTTGTGAACGCCATATACCATTCCTCTAATAGGACTACGAAACGCAATGAGTCTATTTTTCAATTGAATTATTATACGGATAAAAATGAACCTTTATGGATGTGTTTCTCTTTTTGATTTTGATAATGCAAAAGGATGGGAAATCCTTTCTGGTCCTTTACGTTCATTTGCAAGCGAGGAAAATTCTTTTCAGGTG
Coding sequences of Glyma.04g061900
>Glyma.04g061900.1 sequence-type=CDS polypeptide=Glyma.04g061900.1.p locus=Glyma.04g061900 ID=Glyma.04g061900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTGCAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA

>Glyma.04g061900.2 sequence-type=CDS polypeptide=Glyma.04g061900.2.p locus=Glyma.04g061900 ID=Glyma.04g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCTCTCGGATTCTTCGCCCTCGCCATTTTCCTCTTCCTCACTCTCGACTCTGACATCGCTCCTTCTTCCACCGCCTCCGCCTCCGCCTCCGCCGCTTCCTCCGAAGGCGTCGAGGTTACTTACGGCACGGTTCTGAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGACGTGCCCTACGGTTCTGGCAGTGGACAACAATCGGTTACTGGTTTCCCAAATGTCGACGATTCCAATAGTTACTGGATTGTAAGACCTGAGCCAGGAACTTCTGCTAAACAAGGTGACCCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATTTGCATGCATCCCCGATATCAGGCAATCTTGAGGTCAGTTGTTTTGGAGGAGAATCCGAATCTGACACCGGGGACTATTGGAAGCTTATAATAGAAGGAAGTGGAAAGACTTGGAAGCAGGATCAGAGGATTCGCCTTCAGCATATTGACACTGGAGGCTATCTACATAGTCATGATAAGAAATACAGTCGTATTGCTGGGGGTCAGCAGGAGGTTTGTGGTGTTCGTGAAAAGCGTGCTGACAATGTGTGGTTGGCAGCCGAAGGTGTCTACCTTCCCGTTACGGAAAGCAAATGA
Predicted protein sequences of Glyma.04g061900
>Glyma.04g061900.1.p sequence-type=predicted peptide transcript=Glyma.04g061900.1 locus=Glyma.04g061900 ID=Glyma.04g061900.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALGFFALAIFLFLTLDSDIAPSSTASASASAASSEGVEVQVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQRIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*

>Glyma.04g061900.2.p sequence-type=predicted peptide transcript=Glyma.04g061900.2 locus=Glyma.04g061900 ID=Glyma.04g061900.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MALGFFALAIFLFLTLDSDIAPSSTASASASAASSEGVEVTYGTVLKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPNVDDSNSYWIVRPEPGTSAKQGDPIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGESESDTGDYWKLIIEGSGKTWKQDQRIRLQHIDTGGYLHSHDKKYSRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo