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Report for Sequence Feature Glyma.04g061600

Feature Type:gene_model
Chromosome:Gm04
Start:5031313
stop:5041135
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g061600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G25150.1AT TBP-associated factor 5 JGI N/AIEA
GO:0006355GO-bp regulation of transcription, DNA-templated JGI N/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
GO:0005515GO-mf protein binding EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
KOG0263 KOG Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) JGI N/AIEA
PTHR19879Panther TRANSCRIPTION INITIATION FACTOR TFIID JGI N/AIEA
PF00400PFAM WD domain, G-beta repeat JGI N/AIEA
PF04494PFAM WD40 associated region in TFIID subunit JGI N/AIEA

Expression Patterns of Glyma.04g061600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g061600
ParalogEvidenceComments
Glyma.06g062300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g061600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06540 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g061600
>Glyma.04g061600.2 sequence-type=transcript locus=Glyma.04g061600 ID=Glyma.04g061600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTGAATACAATTGCCGTTATTTCTCTTTCAGAAAGGGTTATCCATAAAACAACAACTTAATAAAAAAAAAGAGAGAAAACAGCCCTGCACGTCGACCCAACCTCACTGGAGTTGCGTAGTTGGAATAGAACAATGGCAAAGACGACACAAATGGAGACAAAGAGGAACAAACGAAAGTTTGTGAGATGATTAAGCGTGGACGCAAACAGAGACGAAGAGAAAACACAGTAAGAATCAAATTAGGAGGTGCAGAATTCAAATCCCAAAAGAGGAAATGTATAATATGAAAATGGTAGTTTGGGGATATTTAAAAATTGGGAGGTAGAGGATTCAAATTCCAAGAGTAAAGTAAGTAAAAGGCCAAGGCCATATAACAGATCTGATTCCAGAAATAGCCCCCAGGAAGAATCAAATTTCTTGTACCCGCGAGCGAGGCAGTGGAAGAAGAAAGGGGTTTTTGATTCTGAGATCAAAGAAAGAATGGAGGACGACAAAATAGTTGGATACGTTACAGCATTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAAGAAGAATTCCAACACAACAAATCCAACACTTCCAATTCACTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTACAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTCCGCGTACTTTATCCTGTGTTTATCCACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTAACCATCTTGAGGAAATGGAATTCGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGACAACCTAGCTTAATTTCCGATGACCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCTGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTTAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGGAAAAGTGCTAAACCAGAAGCTAGCACTGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAACTGAAGTGGAACAGTCCGTCCTGGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGTTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTAACACCTTTGATTGGCCACACATCATGTGTCTGGTCCCTTGCTTTCAGGTGATCCCTACTGCACTACTTTATCATAATTAGTAAGGAGATTAATGGTTTTTAAGTTTGCTATCAATTTGGATGTATCAGTTCTGAAGGTTCTATTATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATGCGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAAGTGGGAGTGCTAACAGCAGACTTAGATCGCTGAAAACTTTGTCAACCAAATCTACTCCAGTTTACTCATTACGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGCGCTCTATCAAAAAGTGGTTAATATATTTGAGTATGTCTACTAATAGATTAGATCAGATCAAAGTGGTTGAAGCTGAATTTCTCGCCTAAAAAGCAACGCGCATCATAGTTATGTACTCCCTCTGGGTCCTATATGTAGGGCATTTTCGCAAGGATTAAGAAATGTACTTAGTTTAGTGTTGTGAAATTTGTCTGTAATCTGTATATTTTTTTTTATAAGTGATCTTAAATTTAGAGATCATATTCTCTTTTTTCATTGAATGAATGTATTTCCACTTTTGTAATGACTAGTGATCGTTTCATATATTTGTGAGAATTCAAGGAATTAATTTATCACATTTATTGTTTATGGAT
Coding sequences of Glyma.04g061600
>Glyma.04g061600.1 sequence-type=CDS polypeptide=Glyma.04g061600.1.p locus=Glyma.04g061600 ID=Glyma.04g061600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGACGACAAAATAGTTGGATACGTTACAGCATTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAAGAAGAATTCCAACACAACAAATCCAACACTTCCAATTCACTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTACAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTCCGCGTACTTTATCCTGTGTTTATCCACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTAACCATCTTGAGGAAATGGAATTCGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGACAACCTAGCTTAATTTCCGATGACCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCTGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTTAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGGAAAAGTGCTAAACCAGAAGCTAGCACTGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAACTGAAGTGGAACAGTCCGTCCTGGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGTTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTAACACCTTTGATTGGCCACACATCATGTGTCTGGTCCCTTGCTTTCAGTTCTGAAGGTTCTATTATAGCATCTGGATCTGCTGATTGCACTGTAAAATTGTGGGATGTAAATGCGAGCACCAAGGTTTCTAGGGCTGAAGAAAAAAGTGGGAGTGCTAACAGCAGACTTAGATCGCTGAAAACTTTGTCAACCAAATCTACTCCAGTTTACTCATTACGGTTTTCTCGAAGGAATCTTCTTTTTGCGGCTGGCGCTCTATCAAAAAGTGGTTAA

>Glyma.04g061600.2 sequence-type=CDS polypeptide=Glyma.04g061600.2.p locus=Glyma.04g061600 ID=Glyma.04g061600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGACGACAAAATAGTTGGATACGTTACAGCATTCCTTAAGAAGAAAGGCTTCACGCAAACCGAGAAGATTTTCCAAGAAGAATTCCAACACAACAAATCCAACACTTCCAATTCACTTCTCGAACCCGACATTGCCAACCACCTCCTCGCCTTCTCTCAATTGGAGACTGGTCCTGCTAGGTTCCACGACGGCTACAGCAGACTAAGAACATGGACTTATTCTTCACTCGATTTGTACAAGCACGAGTTGCTCCGCGTACTTTATCCTGTGTTTATCCACTGCTTTATGGATCTTGTCGCCAAAGGACACGTTCAAGAAGCTCGGAACTTCTTCAATACTTTCCGCGAAGACCATGAAATGATGCACTTGCGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTAACCATCTTGAGGAAATGGAATTCGCTCACTCGCTTAGAAAGAGCAAATTCAACATAAAGATATGTGAGTATTCCTATGAGCTTCTGTTGCAACATCTACACAGTACGCAATCCACCACTATACTTGGTATTATCAATGAGCATATTAACTTTCAAGTAACCCCTGGACAACCTAGCTTAATTTCCGATGACCCGGAAGCTGTTACCCTAACTGGAAGCAGCCAGGAAGCAGCAAACCTGATAAATCAAAAAGAAATTCATTGGGGGTTGCTTGAAGACTCTCTTGAAGAACGGCTGGAGAAGGCCGGGGCCTTGCTTTTAGACTCTGAAAAGGGTGAAGGGGAAGCAAAAGAGGGGGAGAATGATGAGACTAAGAAAAGATCCATTGAAGGAGGAAAGCAAGGTGGTGCTTCAGTCAAAAAAGTAAAAAAGGACAAGGGTGGAAGTGCAACTGGGAAAAGTGCTAAACCAGAAGCTAGCACTGTACCTGCAGCTCCTCGAGTTAAGCCAGAACTCCCCTTGCCCGTAATCCCAACTGAAGTGGAACAGTCCGTCCTGGAGGATTTAAGGAACCGTGTACAGCTTAGCAGTGTTGCATTGCCATCAGTTAGCTTTTACACATTTATCAATACACATAATGGTTTAAGCTGTTCATCAATATCCCATGACGGATCATTGATTGCTGGAGGATTTTCTGACTCATCACTGAAGGTTTGGGATATGGCAAAGCTTGGACAACAGGCCAGTTCTCTTTCGCAGGGTGAGAATGACACATCACAAAATGAACAAATATTTGGGCAAGGTGGTGGGAAAAGACAGTATACATTGTTTCAAGGTCATTCAGGGCCTGTTTATGCAGCCTCTTTTAGTCCTGTCGGGGATTTTATCCTTTCATCCTCAGCAGACTCAACAATTCGATTATGGAGCACAAAACTTAATGCCAATCTTGTTTGTTATAAGGGTCACAATTACCCTGTCTGGGATGTTCAGTTTAGTCCTGTAGGGCATTATTTTGCCAGCTCGTCACATGACAGAACTGCTAGGATTTGGTCCATGGACAGGATACAGCCCTTAAGAATAATGGCAGGGCACTTGTCTGATGTTGATTGTGTGCAATGGCATGCCAACTGCAACTACATTGCAACTGGTTCCAGTGATAAAACAGTTCGACTATGGGATGTGCAGAGTGGTGAGTGTGTCCGGGTTTTCGTTGGTCACAGGGTTATGATTTTGTCTTTGGCAATGTCTCCTGATGGTCGCTATATGGCATCTGGCGATGAAGATGGCACGATCATGATGTGGGACCTCTCTAGTGGCCGCTGTCTAACACCTTTGATTGGCCACACATCATGTGTCTGGTCCCTTGCTTTCAGGTGA
Predicted protein sequences of Glyma.04g061600
>Glyma.04g061600.1.p sequence-type=predicted peptide transcript=Glyma.04g061600.1 locus=Glyma.04g061600 ID=Glyma.04g061600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSLLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERLEKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEASTVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQASSLSQGENDTSQNEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFSSEGSIIASGSADCTVKLWDVNASTKVSRAEEKSGSANSRLRSLKTLSTKSTPVYSLRFSRRNLLFAAGALSKSG*

>Glyma.04g061600.2.p sequence-type=predicted peptide transcript=Glyma.04g061600.2 locus=Glyma.04g061600 ID=Glyma.04g061600.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDDKIVGYVTAFLKKKGFTQTEKIFQEEFQHNKSNTSNSLLEPDIANHLLAFSQLETGPARFHDGYSRLRTWTYSSLDLYKHELLRVLYPVFIHCFMDLVAKGHVQEARNFFNTFREDHEMMHLRDLQKLEGVLSPNHLEEMEFAHSLRKSKFNIKICEYSYELLLQHLHSTQSTTILGIINEHINFQVTPGQPSLISDDPEAVTLTGSSQEAANLINQKEIHWGLLEDSLEERLEKAGALLLDSEKGEGEAKEGENDETKKRSIEGGKQGGASVKKVKKDKGGSATGKSAKPEASTVPAAPRVKPELPLPVIPTEVEQSVLEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHDGSLIAGGFSDSSLKVWDMAKLGQQASSLSQGENDTSQNEQIFGQGGGKRQYTLFQGHSGPVYAASFSPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSHDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRVFVGHRVMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCLTPLIGHTSCVWSLAFR*






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