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Report for Sequence Feature Glyma.04g061100

Feature Type:gene_model
Chromosome:Gm04
Start:4981669
stop:4984184
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g061100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10870.1AT chorismate mutase 2 JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009073GO-bp aromatic amino acid family biosynthetic process EnsemblGenomesN/AIEA
GO:0046417GO-bp chorismate metabolic process EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0004106GO-mf chorismate mutase activity EnsemblGenomesN/AIEA
GO:0016853GO-mf isomerase activity EnsemblGenomesN/AIEA
KOG0795 KOG Chorismate mutase JGI N/AIEA
PTHR21145Panther CHORISMATE MUTASE JGI N/AIEA
PWY-3461SoyCyc9 L-tyrosine biosynthesis II Plant Metabolic Network ISS
PWY-3462SoyCyc9 L-phenylalanine biosynthesis II Plant Metabolic Network ISS
PWY-3481SoyCyc9 superpathway of L-phenylalanine and L-tyrosine biosynthesis Plant Metabolic Network ISS
PWY-6120SoyCyc9 L-tyrosine biosynthesis III Plant Metabolic Network ISS
GN7V-58256SoyCyc9-rxn chorismate mutase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g061100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g061100
ParalogEvidenceComments
Glyma.06g061700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g061100 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06450 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g061100
>Glyma.04g061100.2 sequence-type=transcript locus=Glyma.04g061100 ID=Glyma.04g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTGCCAAACTAATAAAGACATAATGTTATTACTTGCAGTTGCAGAACAAATAGTGTCAAACATTTGGGTAGCGTTGACCGATGAATTGACCTTTGCGGTTTCATGCATATAATAAGAAGACATTGTTTTCTTTGGTCTTAATTTTCTATCAATCGTTACTGTATTGTCCTGTTAACTGTGGTGTTGAGTAGTCCTGAAACAATAACATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGAAGCCATTTCAATGCAATCAATCTTAAGAAATGAATATGGTGTCATTGTTTAATTTAAAAGATCAGTTTCTTATGTGGTTGTTTATTGCTGGTTTCTTATGGATGTGAGTTCAGATAATAATATTATATAACTTTTTAGAAAGCTTTACATATGGTTGGATAAAACGGTTCCCATAATATTATGCAAAAAAGTATTGAG
Coding sequences of Glyma.04g061100
>Glyma.04g061100.1 sequence-type=CDS polypeptide=Glyma.04g061100.1.p locus=Glyma.04g061100 ID=Glyma.04g061100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGATCCATCCCAATTTTTTATATAGCAGAAAATTGTGCACAAACGTGGCTCATGCAACCGTAATTGAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGA

>Glyma.04g061100.2 sequence-type=CDS polypeptide=Glyma.04g061100.2.p locus=Glyma.04g061100 ID=Glyma.04g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATGCTTCGATTCCTAGTGCTGTTTCTTACGTTGGCAAGTTGTAGGGAGAGTTACAAAATGGCGAAAGCAGAGTATAACTATACGGTAGATTCAGCGAGAGCGTCTTTGGTTAGACAAGAAGACACCATCATATTTGGTTTGATCGAGAGAGCAAGGTTCCCCTTAAATTCTCCAACCTACAATCAAAGTTACACTTCCATTCCCCAATTTCGTGGCACATTGCTCGATTTTCTCGTTCGCCACACCGAGGCCATTCAAGCTAAGGCAGGAAGGTACATTAACCCTGAAGAAAATCCTTTCTTCCCAGAAAATTTACCACCTTCGGTTGTGCCACGTTACCCCTTCTCACAGTTTTTGCATCCTGCAGCCGCTATGATCAACATAAACAATGCCATATGGAAACTGTACTTTGATGAGCTGCTTCCAATGTTTGTTGCTTCTGGTGATGATGGCAACTATGCGCAAACTGCTGCTACCGATCTTTCATTGTTGCAGGCCATCTCTAGAAGGATTCATTACGGAAAGTTTGTTGGTGAGGCCAAATTCAGAGAATCTCCTCAAGGCTATGAGCCTTTAATTCGTGCTAAGGACAAAGGAGCATTGATGAAATTGTTAACATATGAGAGCGTTGAAGAGATGGTGGTGAAGAGGGTTAAAAAGAAGGCCATGGTGTTTGGGCAGGAAGTGAGCCTTGATCGTGATGTCAAGGGAATAACATACAAGGTTGATCCATCAGTAGTTTCTCTCTTGTACCAGAAATGGTTAATACCCCTCACAAAAAATGTTGAAGTCGAGTACTTACTAAACCGCTTAGACTGA
Predicted protein sequences of Glyma.04g061100
>Glyma.04g061100.1.p sequence-type=predicted peptide transcript=Glyma.04g061100.1 locus=Glyma.04g061100 ID=Glyma.04g061100.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMLRFLVLFLTLASCRESYKMAKAEYNYTVDSARASLVRQEDTIIFGLIERARFPLNSPTYNQSYTSIPQFRGTLLDFLVRHTEAIQAKAGRYINPEENPFFPENLPPSVVPRYPFSQFLHPAAAMININNAIWKLYFDELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVGEAKFRESPQGYEPLIRAKIHPNFLYSRKLCTNVAHATVIEDKGALMKLLTYESVEEMVVKRVKKKAMVFGQEVSLDRDVKGITYKVDPSVVSLLYQKWLIPLTKNVEVEYLLNRLD*

>Glyma.04g061100.2.p sequence-type=predicted peptide transcript=Glyma.04g061100.2 locus=Glyma.04g061100 ID=Glyma.04g061100.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MMLRFLVLFLTLASCRESYKMAKAEYNYTVDSARASLVRQEDTIIFGLIERARFPLNSPTYNQSYTSIPQFRGTLLDFLVRHTEAIQAKAGRYINPEENPFFPENLPPSVVPRYPFSQFLHPAAAMININNAIWKLYFDELLPMFVASGDDGNYAQTAATDLSLLQAISRRIHYGKFVGEAKFRESPQGYEPLIRAKDKGALMKLLTYESVEEMVVKRVKKKAMVFGQEVSLDRDVKGITYKVDPSVVSLLYQKWLIPLTKNVEVEYLLNRLD*






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