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Report for Sequence Feature Glyma.04g059700

Feature Type:gene_model
Chromosome:Gm04
Start:4892584
stop:4896553
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g059700
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31770.1AT debranching enzyme 1 JGI N/AIEA
GO:0000398GO-bp mRNA splicing, via spliceosome EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing EnsemblGenomesN/AIEA
GO:0006397GO-bp mRNA processing JGI N/AIEA
GO:0009793GO-bp embryo development ending in seed dormancy EnsemblGenomesN/AIEA
GO:0090502GO-bp RNA phosphodiester bond hydrolysis, endonucleolytic EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0008419GO-mf RNA lariat debranching enzyme activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity JGI N/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds EnsemblGenomesN/AIEA
GO:0016788GO-mf hydrolase activity, acting on ester bonds JGI N/AIEA
KOG2863 KOG RNA lariat debranching enzyme JGI N/AIEA
PTHR12849Panther RNA LARIAT DEBRANCHING ENZYME JGI N/AIEA
PF00149PFAM Calcineurin-like phosphoesterase JGI N/AIEA
PF05011PFAM Lariat debranching enzyme, C-terminal domain JGI N/AIEA

Expression Patterns of Glyma.04g059700
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g059700 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g06310 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g059700
>Glyma.04g059700.1 sequence-type=CDS polypeptide=Glyma.04g059700.1.p locus=Glyma.04g059700 ID=Glyma.04g059700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGATAGCGGTGGAAGGGTGCATGCACGGGGACCTGGACAATGTCTACAGAACCCTTCAACAGTTGGAGAAATCTGAAAACACGAAAATCGACCTTCTCCTCTGCTGCGGCGATTTCCAAGCCGTGAGGAACGAGCATGACTTGAAGAGCCTGAACGTCCCTCTCAAATACCGCTCCATGAACTCCTTCTGGAAGTACTATTCCGGCGCCGAGGTTGCCCCCTACCCCACCATCTTCATCGGCGGCAACCACGAAGCTTCCAATTATCTCTGGGAACTGTACTATGGAGGATGGGCTGCTCCTAATATCTACTTCTTGGGAGCTGCTGGGGTGGTGAGGTTTGGGAATGTTCGAATTGGTGGCCTCTCTGGGATCTATAAATCTTTCGACTATAAATTAGGACACTTTGAGAGGCCTCCCTATGATCATAATACCATTAAGTCCGTGTATCATGTTCGTGAATATGATGTTCGCAAATTGATGCAAGTCAAGGAGCCAATTGATGTTTTTCTTTCGCATGATTGGCCAGTGAGAATCACTGATTATGGGGATTGGAGGGAGCTTGTTCGGCGCAAGCATTATTTTAAGCAAGAGATAGAGGAAAAAAGACTAGGTAGTAAACCTGCTGCTGAACTTCTAGAAAAATTGAAACCACATTATTGGTTTTCAGCTCACTTACACTGCAAGTTTGCTGCTCTTGTTCAACATGGGGAAGGAGGTCCACTGACAAAATTTCTTGCACTGGATAAATGTATTCCTGGGCGTGATTTCTTACAGATTGTGGAAATTGAATCAGATGCAGGACCTTATGAGATTCAGTATGATGAAGAATGGTTAGCAATAACACGGAAGTTCAACCCTATATTCCCTTTGACTTACAAAGGTGCAGACTTCAGAGGCATAAATCTTGAGATGGAAGATTGTCTTGAATGGGTTAGAAGCAAGCTACAAGAGAGGGGGTGCAAACCTTTTGAATTTGTTAGAACAGCTCCTTGTTATGACCCTTCACGATCCAATTTTGATGGTGCTTTTGCTGTGAATCCCCGAAATCCTCAGACAGAATCTTTTGTGCGGCTTCTGGAACTTCCATATCTTTTTGATAGGAATCCTGAAGCAAAGGATTTGTCACCTTATCCTTCTCCTTCAATTCAGAGAGGCACGGCTTATGATAGCGAGGACATTCCCATTGATGATGTGGCTGATGATGATGATGATGATGAAGAGCTCCCAAAAGTTGATAACGTTGAAACTGAGACTTCCAATTTGTGA
Predicted protein sequences of Glyma.04g059700
>Glyma.04g059700.1.p sequence-type=predicted peptide transcript=Glyma.04g059700.1 locus=Glyma.04g059700 ID=Glyma.04g059700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKIAVEGCMHGDLDNVYRTLQQLEKSENTKIDLLLCCGDFQAVRNEHDLKSLNVPLKYRSMNSFWKYYSGAEVAPYPTIFIGGNHEASNYLWELYYGGWAAPNIYFLGAAGVVRFGNVRIGGLSGIYKSFDYKLGHFERPPYDHNTIKSVYHVREYDVRKLMQVKEPIDVFLSHDWPVRITDYGDWRELVRRKHYFKQEIEEKRLGSKPAAELLEKLKPHYWFSAHLHCKFAALVQHGEGGPLTKFLALDKCIPGRDFLQIVEIESDAGPYEIQYDEEWLAITRKFNPIFPLTYKGADFRGINLEMEDCLEWVRSKLQERGCKPFEFVRTAPCYDPSRSNFDGAFAVNPRNPQTESFVRLLELPYLFDRNPEAKDLSPYPSPSIQRGTAYDSEDIPIDDVADDDDDDEELPKVDNVETETSNL*






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