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Report for Sequence Feature Glyma.04g054300

Feature Type:gene_model
Chromosome:Gm04
Start:4409424
stop:4414833
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g054300
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G26180.1AT S-adenosyl-L-methionine-dependent methyltransferases superfamily protein JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0070475GO-bp rRNA base methylation EnsemblGenomesN/AIEA
GO:0005730GO-cc nucleolus EnsemblGenomesN/AIEA
GO:0003723GO-mf RNA binding EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008173GO-mf RNA methyltransferase activity EnsemblGenomesN/AIEA
GO:0008757GO-mf S-adenosylmethionine-dependent methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG2360 KOG Proliferation-associated nucleolar protein (NOL1) JGI N/AIEA
PTHR22807Panther NOP2(YEAST)-RELATED NOL1/NOP2/FMU(SUN) DOMAIN-CONTAINING JGI N/AIEA
PTHR22807:SF4Panther METHYLTRANSFERASE NSUN5-RELATED JGI N/AIEA
PF01189PFAM NOL1/NOP2/sun family JGI N/AIEA

Expression Patterns of Glyma.04g054300
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g054300
ParalogEvidenceComments
Glyma.06g054600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g054300 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g05710 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g054300
>Glyma.04g054300.2 sequence-type=transcript locus=Glyma.04g054300 ID=Glyma.04g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ACAAAACGTAGCACTTGTTTGTGTTAGGTACTCTAAATCTTGAGTTGAGCCTGCGCAAAAACCCTAAACCCTGTGAATGAAGAAGACGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGCTCAAGTTCAAGGGCGCGGAGAGGTCAGCTTACTTCGCACGCAGAGAGGCAGCGAAGGTTTTGAAAGTGATTCTCGAAGGAGACGCCAAACGCCGCGCTCTAGCCTCCATCAAATCCCTCATTTATCAACCTTCCGTTAGAAACAAGAAGGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTAGGCCAGGCGGTTTCACTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACCAAGATGCCCTGCGTTCAACCCTCAAACAGCTTTTGTTACAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATATTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGATTTGCTGATACTCCCACCAGGAACAGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTCTGCAAGTTCTTGATGCATGTGCAGCACCAGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATTGCATGTGAGCTACAAAAAGAAAGGATTAAACGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCTAAATCCCAAGGATCCTTCATACTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGATCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGCTGATATGGAAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTTTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAGTTGGCAAAGCCATTCCCTGGGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTAAACATGGCGAGGGTTTCTTCATTGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGCGATCAAATAAAAATGAAACTAGAATTTCCGACAGCACTGCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGTGTACCGTTTGTTAGCACAAACCCATTCAAAACGTGGTTATATGATAGTAAAATTGTTAAGTCTTGGCGGTCGAATTGAAGGTATAAAAGAGGTGGCTAAAGACATAATATTGTACTTTACTCTATTGATGTCCGTGTAAAACCCATTTAGAAAATGGATTAACTTGATTTTTTGTTTACATTTTTAAATAATTTTCATTACATTCGTTCATTTTCTTAAATGCCTATTTATTGAAATTTGTATCAAAGTTCTGTCTAGCCTAGGCTAGAAAA
Coding sequences of Glyma.04g054300
>Glyma.04g054300.1 sequence-type=CDS polypeptide=Glyma.04g054300.1.p locus=Glyma.04g054300 ID=Glyma.04g054300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGACGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGCTCAAGTTCAAGGGCGCGGAGAGGTCAGCTTACTTCGCACGCAGAGAGGCAGCGAAGGTTTTGAAAGTGATTCTCGAAGGAGACGCCAAACGCCGCGCTCTAGCCTCCATCAAATCCCTCATTTATCAACCTTCCGTTAGAAACAAGAAGGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTAGGCCAGGCGGTTTCACTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACCAAGATGCCCTGCGTTCAACCCTCAAACAGCTTTTGTTACAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATATTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGATTTGCTGATACTCCCACCAGGAACAGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTCTGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCCCTTAGCCCTGAACCAGGCTGGGAGGTTCTTGATGCATGTGCAGCACCAGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATTGCATGTGAGCTACAAAAAGAAAGGATTAAACGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCTAAATCCCAAGGATCCTTCATACTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGATCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGCTGATATGGAAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTTTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAGTTGGCAAAGCCATTCCCTGGGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTAAACATGGCGAGGGTTTCTTCATTGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGCGATCAAATAAAAATGAAACTAGAATTTCCGACAGCACTGCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGTGTACCGTTTGTTAGCACAAACCCATTCAAAACGTGGTTATATGATAGTAAAATTGTTAAGTCTTGGCGGTCGAATTGA

>Glyma.04g054300.2 sequence-type=CDS polypeptide=Glyma.04g054300.2.p locus=Glyma.04g054300 ID=Glyma.04g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGAAGAAGACGAAGAAGAGTGGCGAAGAAAATGGGGGCAAGCTCAAGTTCAAGGGCGCGGAGAGGTCAGCTTACTTCGCACGCAGAGAGGCAGCGAAGGTTTTGAAAGTGATTCTCGAAGGAGACGCCAAACGCCGCGCTCTAGCCTCCATCAAATCCCTCATTTATCAACCTTCCGTTAGAAACAAGAAGGCCACATTCGCTCTCATTTGTCAAACCCTAAAACATCTTCCCATTATCAAGGATGTCTTGGAAGCTGCTTCTATTCTCAACACCAAGTGGAAGAGGCAACGAGAATTGATTTATATCATTGTCTATGATATCCTTTTAGGCCAGGCGGTTTCACTAGTTGGTGATGCTGAGAAGTACCTTATGCGCCACCAAGATGCCCTGCGTTCAACCCTCAAACAGCTTTTGTTACAGAGAAATGTCAAGACAGTTAAACAGTTGATTGCTCTGCATCAAGTTCCTGATATTTCTGTACCTCGATATGTTCGTGTGAATACACTTAAACTGGATGTTGATTCTGCCTTGCTTGAACTTCAGAAAAAATACTCGGTTCAAAAGGATAATTTACTGCCTGATTTGCTGATACTCCCACCAGGAACAGATTTACATGATCATCCTCTTGTCAAGAATGGCAGTATCTTTCTGCAAGTTCTTGATGCATGTGCAGCACCAGGAAACAAAACTGTTCACCTTGCTGCCCTTATGAAGAGAAAGGGTAAGATTATTGCATGTGAGCTACAAAAAGAAAGGATTAAACGTTTGAAAGACACTATAAAGCTATCTGGTGCTTCTAACATACAAGTCCTCAATGATGATTTCTTGAACCTAAATCCCAAGGATCCTTCATACTCCAAGGTGAAAGCTATTCTTTTGGATCCTTCCTGCTCTGGTTCTGGGACTGCTGCTTCAAGACTAGATCATCTACTCCCATCTAAAGCAGCAGGTCAGGATGCTGATATGGAAAGATTGAACAAGCTTGCAACTTTCCAGAGAAAGGCTCTTCAGCATGCTTTACTTTTTCCAGCTGTTGAAAGAATTGTTTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTGCCCATAGCCGAATCAAATGGATTTCAGTTGGCAAAGCCATTCCCTGGGTGGGAATGCCGTGGTCTTCCAGTGTTTGAAGGCTCTGAATGCTTGGTTCGGACAGATCCTGCTAAACATGGCGAGGGTTTCTTCATTGCTTTGTTTACTAGGAAAGATGCTAACTTTTCAGGGCGATCAAATAAAAATGAAACTAGAATTTCCGACAGCACTGCCGAAATTAAAAACGCGCGAAGAAAGAAGAAACGTGTACCGTTTGTTAGCACAAACCCATTCAAAACGTGGTTATATGATAGTAAAATTGTTAAGTCTTGGCGGTCGAATTGA
Predicted protein sequences of Glyma.04g054300
>Glyma.04g054300.1.p sequence-type=predicted peptide transcript=Glyma.04g054300.1 locus=Glyma.04g054300 ID=Glyma.04g054300.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKTKKSGEENGGKLKFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFLQGKASSMAAPALSPEPGWEVLDACAAPGNKTVHLAALMKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDADMERLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFPGWECRGLPVFEGSECLVRTDPAKHGEGFFIALFTRKDANFSGRSNKNETRISDSTAEIKNARRKKKRVPFVSTNPFKTWLYDSKIVKSWRSN*

>Glyma.04g054300.2.p sequence-type=predicted peptide transcript=Glyma.04g054300.2 locus=Glyma.04g054300 ID=Glyma.04g054300.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MKKTKKSGEENGGKLKFKGAERSAYFARREAAKVLKVILEGDAKRRALASIKSLIYQPSVRNKKATFALICQTLKHLPIIKDVLEAASILNTKWKRQRELIYIIVYDILLGQAVSLVGDAEKYLMRHQDALRSTLKQLLLQRNVKTVKQLIALHQVPDISVPRYVRVNTLKLDVDSALLELQKKYSVQKDNLLPDLLILPPGTDLHDHPLVKNGSIFLQVLDACAAPGNKTVHLAALMKRKGKIIACELQKERIKRLKDTIKLSGASNIQVLNDDFLNLNPKDPSYSKVKAILLDPSCSGSGTAASRLDHLLPSKAAGQDADMERLNKLATFQRKALQHALLFPAVERIVYSTCSINQIENEDVIKSVLPIAESNGFQLAKPFPGWECRGLPVFEGSECLVRTDPAKHGEGFFIALFTRKDANFSGRSNKNETRISDSTAEIKNARRKKKRVPFVSTNPFKTWLYDSKIVKSWRSN*






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