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Report for Sequence Feature Glyma.04g053800

Feature Type:gene_model
Chromosome:Gm04
Start:4360436
stop:4366002
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g053800
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G72770.1AT homology to ABI1 JGI N/AIEA
GO:0006470GO-bp protein dephosphorylation EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004721GO-mf phosphoprotein phosphatase activity EnsemblGenomesN/AIEA
GO:0004722GO-mf protein serine/threonine phosphatase activity EnsemblGenomesN/AIEA
GO:0016787GO-mf hydrolase activity EnsemblGenomesN/AIEA
GO:0043169GO-mf cation binding EnsemblGenomesN/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0698 KOG Serine/threonine protein phosphatase JGI N/AIEA
PTHR13832Panther PROTEIN PHOSPHATASE 2C JGI N/AIEA
PTHR13832:SF115Panther JGI N/AIEA
PF00481PFAM Protein phosphatase 2C JGI N/AIEA

Expression Patterns of Glyma.04g053800
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g053800 not represented in the dataset
Glyma.04g053800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g053800
ParalogEvidenceComments
Glyma.06g054000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g053800 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g05661 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g053800
>Glyma.04g053800.1 sequence-type=CDS polypeptide=Glyma.04g053800.1.p locus=Glyma.04g053800 ID=Glyma.04g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGAGATGTCAACCACGGTTACAGTGCCATGGAGAGTAGGTAATTCAGTGTGTGATAAGCCAACCATAGCTACCCACATGGATGTATCCAGAATTAAGCTGATGGCAGATGCAGGGTTGTTATCCAATTCTATAACTAAGGTTTCCGATGAAACTTTTATAGGTTCAGATGAGAATCATGACAGTGGTTGTCATGAGGATGAAATTGGTATTACAGCAGTCACAGCTCCAGAACAGCAAAGAGAAGGGGAAATTCCGATGTTGGATATGATATCCCAAAATATAAGCTCTCTGGTTGTTGGTGATGAAGTTTTAACCCCAGAAATTGAGGAGGATGATTTGATATCACTGGAAGGTGATCCAATTATTGATAGCTCTTCACTTTCAGTAGCCAGTGAACATAGTAGTATTTGTGGAGATGAGTTCATCAGTTCTGAGGTTTCTTCAGATTTAGGGACAACAAGTTCCAAAGACATAGGAAAGAGCATCTCCACTGTCAAAATTGCAGCCAGGGCTACTGATTTGAGTATGTCAAATGTAGAGGCAGATGTGGCAGTGAGCCTTGAAGAGACAGGAGTTAGATCTGGCTCAAAGCCTACTACAGGTGTTTTTCACCAACTAACTCTGGAAAGATCTGTGAGTGGAACAGTAGGTAGAAGTGTTTTTGAATTAGATTGTACCCCACTATGGGGATTTACATCTGTGTGTGGAAAAAGGCCTGAGATGGAAGATGCAGTTGCAACTGTTCCTCGATTTTTGAAAATTCCTATTGAAATGCTAACTGGTGATAGGTTACCTGATGGAATAAACAAATGTTTCGGTCAGCAGACAATACATTTCTTTGGAGTCTATGATGGGCATGGTGGCTCTCAGGTGGCAAAGTATTGCCGTGAGCGCATGCATTTGGCCTTGGCTGAGGAAATCGAATCTGTCAAGGAAGGTCTATTAGTTGAAAATACCAAGAATGATTGTAGAGATCTGTGGAAAAACACTTTCACCAATTGTTTTTTGAAGGTTGATGCTGAAGTTGGGGGGGAAGTTAATCGTGAGCCTGTTGCCCCAGAAACTGTTGGATCCACTTCTGTTGTTGCTATTATCTGTTCATCTCATATCATAGTTTCAAACTGTGGTGATTCAAGAGCGGTTCTGTGTCGTGGCAAAGAACCCATGGCGCTATCTGTTGATCATAAACCAAATCGAGATGATGAATATGCAAGAATTGAGGCCGCTGGAGGCAAGGTGATACAATGGAATGGTCACCGAGTATTTGGTGTTCTAGCAATGTCAAGGTCTATTGGTGATAGGTATTTGAAGCCATGGATTATTCCAGACCCCGAGGTGACGTTTCTTCCTCGTGCGAAAGATGATGAATGCCTCATTCTGGCCAGTGATGGCCTGTGGGATGTCATGACCAACGAAGAGGTGTGTGACATTGCTCGGCGGCGCATACTTCTCTGGCACAAGAAAAATGGCTTGGCATTGCCCTCAGAAAGGGGAGAGGGAATTGATCCTGCTGCACAAGCAGCTGCAGAGTACCTATCGAACCGTGCTCTTCAGAAAGGAAGCAAAGACAACATCACTGTAATTGTGGTGGATTTGAAAGCTCAAAGAAAATTTAAGAGCAAGACTTGA
Predicted protein sequences of Glyma.04g053800
>Glyma.04g053800.1.p sequence-type=predicted peptide transcript=Glyma.04g053800.1 locus=Glyma.04g053800 ID=Glyma.04g053800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEEMSTTVTVPWRVGNSVCDKPTIATHMDVSRIKLMADAGLLSNSITKVSDETFIGSDENHDSGCHEDEIGITAVTAPEQQREGEIPMLDMISQNISSLVVGDEVLTPEIEEDDLISLEGDPIIDSSSLSVASEHSSICGDEFISSEVSSDLGTTSSKDIGKSISTVKIAARATDLSMSNVEADVAVSLEETGVRSGSKPTTGVFHQLTLERSVSGTVGRSVFELDCTPLWGFTSVCGKRPEMEDAVATVPRFLKIPIEMLTGDRLPDGINKCFGQQTIHFFGVYDGHGGSQVAKYCRERMHLALAEEIESVKEGLLVENTKNDCRDLWKNTFTNCFLKVDAEVGGEVNREPVAPETVGSTSVVAIICSSHIIVSNCGDSRAVLCRGKEPMALSVDHKPNRDDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVTFLPRAKDDECLILASDGLWDVMTNEEVCDIARRRILLWHKKNGLALPSERGEGIDPAAQAAAEYLSNRALQKGSKDNITVIVVDLKAQRKFKSKT*






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