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Report for Sequence Feature Glyma.04g049200

Feature Type:gene_model
Chromosome:Gm04
Start:3978575
stop:3986480
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g049200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G10070.1AT branched-chain amino acid transaminase 2 JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0008652GO-bp cellular amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0009081GO-bp branched-chain amino acid metabolic process EnsemblGenomesN/AIEA
GO:0009082GO-bp branched-chain amino acid biosynthetic process EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity JGI N/AIEA
GO:0004084GO-mf branched-chain-amino-acid transaminase activity EnsemblGenomesN/AIEA
GO:0008483GO-mf transaminase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0052654GO-mf L-leucine transaminase activity EnsemblGenomesN/AIEA
GO:0052655GO-mf L-valine transaminase activity EnsemblGenomesN/AIEA
GO:0052656GO-mf L-isoleucine transaminase activity EnsemblGenomesN/AIEA
KOG0975 KOG Branched chain aminotransferase BCAT1, pyridoxal phosphate enzymes type IV superfamily JGI N/AIEA
PTHR11825Panther SUBGROUP IIII AMINOTRANSFERASE JGI N/AIEA
PTHR11825:SF2Panther BRANCHED-CHAIN-AMINO-ACID AMINOTRANSFERASE, MITOCHONDRIAL JGI N/AIEA
PF01063PFAM Aminotransferase class IV JGI N/AIEA
BRANCHED-CHAIN-AA-SYN-PWYSoyCyc9 superpathway of branched chain amino acid biosynthesis Plant Metabolic Network ISS
LEU-DEG2-PWYSoyCyc9 L-leucine degradation I Plant Metabolic Network ISS
LEUSYN-PWYSoyCyc9 L-leucine biosynthesis Plant Metabolic Network ISS
GN7V-50553SoyCyc9-rxn leucine transaminase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g049200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g049200 not represented in the dataset
Glyma.04g049200 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g049200
ParalogEvidenceComments
Glyma.06g050100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g049200 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g05190 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g049200
>Glyma.04g049200.2 sequence-type=transcript locus=Glyma.04g049200 ID=Glyma.04g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTCCAAAAAAAAAATAAAAAATGAGCAAAACACTCGAGGTTGTATAAATGGCTATTCAGATTGTAGAGCTGGCTTTACCCTTTACTCCTATATATAGTGCATATCACTTTCTTAGTTTCTCTCCATTATTTGATGTGCATGCTCTCGCATTCATACCTGTTTCCGACACATACACCTCACCACCACCACTGCGTTTTAAAGTTGGGCTTCTCCTACCAGAAGGATAGGGCACAATGATTCAAAGAATTGTGTACTTTCCCAGTTTAAGGAAATTGCTTCTTCGGGCTGGTTCTAATTCTGCTTCGTCCAAGATCGGAACGAACAATTGCTTTGCTTCTCAGCCCTCCCCTCTTCGGAGTCACAGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAACAACGCGTGTTTATAATTGTTTATTCCAATGTTATTAAACAAATTTTAAACTATAATGATTGTCTATACCTAAAGTGAATGAAATACTGTGTTGTTCGTTATCTAAATGCATGTTATATATGTAAAATGTTATGCACATTATATAAAGCAAAAACTA

>Glyma.04g049200.3 sequence-type=transcript locus=Glyma.04g049200 ID=Glyma.04g049200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATAAGAAATACTCTTAATCACTTATATCTTATTTAAAATTCACTTCAATAAATCATATGTTACATTTATATGCATCTTACATTAAATAAAGATATTTTAGACTATATATATTGATATTTTATACTTAATAATGCTCCTCAATCAGACTGGTCATTCTAGATCCAATTTTAATTAAATATGGTCGCTTTACATCCAAATTTATCCTAAATTTAAATTAATCCAACTCATGACACTCTTAGACAAATCATCACTTATAAATCTAACTATTAAAAATTATATATGTGTGCGTTCACACACGCAATAAATTATAATTATTAAAATTTATTATAACCCTtttaattaaataattttttttattttttatttatAAAATACACACTCGTGTTAAAAAGAAAATATTATTGTTCTATATTCTTTTAAAAAACAATTAATTACCGAACTTCCACTCACCACCACCCAAATAAGAAAATAAAACAATTAGGGAAGGGATTGAGGAGTCTGCTTATTATCGTGGAGTTGATTGGTAGATTAATTCAGACTGATCTAAACAAATTTATATTGCAACAGATCGGAACGAACAATTGCTTTGCTTCTCAGCCCTCCCCTCTTCGGAGTCACAGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAACAACGCGTGTTTATAATTGTTTATTCCAATGTTATTAAACAAATTTTAAACTATAATGATTGTCTATACCTAAAGTGAATGAAATACTGTGTTGTTCGTTATCTAAATGCATGTTATATATGTAAAATGTTATGCACATTATATAAAGCAAAAACTA
Coding sequences of Glyma.04g049200
>Glyma.04g049200.1 sequence-type=CDS polypeptide=Glyma.04g049200.1.p locus=Glyma.04g049200 ID=Glyma.04g049200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCAAAGAATTGTGTACTTTCCCAGTTTAAGGAAATTGCTTCTTCGGGCTGGTTCTAATTCTGCTTCGTCCAAGATCGGAACGAACAATTGCTTTGCTTCTCAGCCCTCCCCTCTTCGGAGTCACAGCAGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAA

>Glyma.04g049200.2 sequence-type=CDS polypeptide=Glyma.04g049200.2.p locus=Glyma.04g049200 ID=Glyma.04g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGATTCAAAGAATTGTGTACTTTCCCAGTTTAAGGAAATTGCTTCTTCGGGCTGGTTCTAATTCTGCTTCGTCCAAGATCGGAACGAACAATTGCTTTGCTTCTCAGCCCTCCCCTCTTCGGAGTCACAGTGATGACGAGTATGCTGATGTGGACTGGGACAGTCTTGGATTTGGACTGATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAA

>Glyma.04g049200.3 sequence-type=CDS polypeptide=Glyma.04g049200.3.p locus=Glyma.04g049200 ID=Glyma.04g049200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACCACTGATTATATGTACATTACTAAATGTTGTGAGGGCCAAAATTTTGGACAAGGACAACTCAGTCGTTATGGGAACATTGAACTCAGTCCATCAGCTGGGGTCCTAAATTATGGTCAGGGATTATTCGAAGGCACGAAAGCATACAGAAAAGAAAATGGGGGCTTGCTACTCTTCCGTCCAGAAGAAAATGCCATTCGCATGAAGATTGGAGCCGAAAGAATGTGCATGGCATCCCCTTCCATTGATAATTTTGTTGATGCTTTGAAGCAAACTGTATTGGCTAATAAGCGTTGGGTTCCTCCACCGGGCAAAGGATCCTTGTACCTTAGGCCTCTGCTCCTAGGAACTGGTCCAGTTTTGGGTTTGGCTCCTGCACCTCAATACACATTCCTCATATTTGCTTCCCCTGTTCGTAACTATTTCAAGGAGGGCTCTGCTCCACTCAACTTGTACGTGGAGGAGAACTTTGACCGTGCTTCTAGCCGCGGCACTGGAAACGTTAAAACCATTTCCAATTATGCACCGGTCTTGATGGCACAAATTCAAGCCAAGAAAAGAGGATTTTCGGATGTGCTATACCTTGATTCAGCCACAAAGAAAAATCTGGAGGAGGTCTCTTCTTGTAACATTTTTATTGCCAAGGGCAAATGCATCTCAACACCTGCTACCAATGGAACTATTCTTTCCGGAATTACTCGAAAAAGTGTCATTGAAATTGCTCGTGATCATGGCTATCAGGTAGAAGAGCGTGTTGTTAACGTGGATGAATTAATTGAGGCTGATGAAGTTTTCTGCACAGGAACTGCGGTCGGTGTTGCTCCAGTAGGGAGTATCACATACCAGGATAAAAGGATGGAATATATAACAGGTTCTGGAACCATTTGTCAAGAGTTGAACAATACGATTTCAGGAATTCAAACGGGTACTATTGAAGATAAGAAGGGATGGATTGTTGAAGTTGATTAA
Predicted protein sequences of Glyma.04g049200
>Glyma.04g049200.1.p sequence-type=predicted peptide transcript=Glyma.04g049200.1 locus=Glyma.04g049200 ID=Glyma.04g049200.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIQRIVYFPSLRKLLLRAGSNSASSKIGTNNCFASQPSPLRSHSSDDEYADVDWDSLGFGLMTTDYMYITKCCEGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMKIGAERMCMASPSIDNFVDALKQTVLANKRWVPPPGKGSLYLRPLLLGTGPVLGLAPAPQYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASSRGTGNVKTISNYAPVLMAQIQAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYQVEERVVNVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICQELNNTISGIQTGTIEDKKGWIVEVD*

>Glyma.04g049200.2.p sequence-type=predicted peptide transcript=Glyma.04g049200.2 locus=Glyma.04g049200 ID=Glyma.04g049200.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MIQRIVYFPSLRKLLLRAGSNSASSKIGTNNCFASQPSPLRSHSDDEYADVDWDSLGFGLMTTDYMYITKCCEGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMKIGAERMCMASPSIDNFVDALKQTVLANKRWVPPPGKGSLYLRPLLLGTGPVLGLAPAPQYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASSRGTGNVKTISNYAPVLMAQIQAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYQVEERVVNVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICQELNNTISGIQTGTIEDKKGWIVEVD*

>Glyma.04g049200.3.p sequence-type=predicted peptide transcript=Glyma.04g049200.3 locus=Glyma.04g049200 ID=Glyma.04g049200.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTTDYMYITKCCEGQNFGQGQLSRYGNIELSPSAGVLNYGQGLFEGTKAYRKENGGLLLFRPEENAIRMKIGAERMCMASPSIDNFVDALKQTVLANKRWVPPPGKGSLYLRPLLLGTGPVLGLAPAPQYTFLIFASPVRNYFKEGSAPLNLYVEENFDRASSRGTGNVKTISNYAPVLMAQIQAKKRGFSDVLYLDSATKKNLEEVSSCNIFIAKGKCISTPATNGTILSGITRKSVIEIARDHGYQVEERVVNVDELIEADEVFCTGTAVGVAPVGSITYQDKRMEYITGSGTICQELNNTISGIQTGTIEDKKGWIVEVD*






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