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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G58440.1 | AT | FAD/NAD(P)-binding oxidoreductase family protein | JGI | N/A | IEA |
| GO:0016126 | GO-bp | sterol biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | EnsemblGenomes | N/A | IEA |
| GO:0055114 | GO-bp | oxidation-reduction process | JGI | N/A | IEA |
| GO:0005783 | GO-cc | endoplasmic reticulum | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | EnsemblGenomes | N/A | IEA |
| GO:0016021 | GO-cc | integral component of membrane | JGI | N/A | IEA |
| GO:0004506 | GO-mf | squalene monooxygenase activity | EnsemblGenomes | N/A | IEA |
| GO:0004506 | GO-mf | squalene monooxygenase activity | JGI | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | EnsemblGenomes | N/A | IEA |
| GO:0050660 | GO-mf | flavin adenine dinucleotide binding | JGI | N/A | IEA |
| PTHR10835 | Panther | SQUALENE MONOOXYGENASE | JGI | N/A | IEA |
| PF08491 | PFAM | Squalene epoxidase | JGI | N/A | IEA |
| PWY-2541 | SoyCyc9 | plant sterol biosynthesis | Plant Metabolic Network | ISS | |
| PWY-5670 | SoyCyc9 | epoxysqualene biosynthesis | Plant Metabolic Network | ISS | |
| PWY-6663 | SoyCyc9 | plant sterol biosynthesis II | Plant Metabolic Network | ISS | |
| GN7V-59971 | SoyCyc9-rxn | squalene monooxygenase | Plant Metabolic Network | ISS |
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Glyma.04g048500 not represented in the dataset |
Glyma.04g048500 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g05131 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g048500.1 sequence-type=CDS polypeptide=Glyma.04g048500.1.p locus=Glyma.04g048500 ID=Glyma.04g048500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGTGTGCGACTGGAGCAGGAACAGCTACTTCCCTAATTGAAGAGAAGGGGATAATTAAAGGCATGCGCTACAAAACGAAGGATAATAAGGAATTTTCAGCTTGTGCACCCCTTACCATTGTCTGTGATGGCAGTTCCTCAAATTTGCGTCGTTCTCTGTGTAATCCTAAGGTAGACGTTCCCTCTCGTTTTGTTGGCTTAGTTTTGGAGAATTGTCCTTGTGCAAATCATAGCCATCTCATATTGGGAGATCCTTCGCCAGTTGTGTTCTATCCTATAAGTAGTTCAGAAGTCCGTTGTCTTGTTGATGTTCCTGGTCAGAAAGTTCCATCCATTTCCAATGGTGAAATGGCAAAGTATTTGAAGACAGTGATAGCTCCACAGATTCCTCTTGAGCTTCATGACGCTTTCATAGCCGCAGTGGACAAAGGCAACATAAGGACAATGCGAAACAGAAGCAAGCCAGCAGCTTCTTATCCTACTCCTGGAGCCCAGCTGATGGGAGATGCATTCAACATGGGGTATTTGCGTGACCTGAGTGATGCACCTAGCCTTTGCAAATACCTTGAATCCTTTTATACCTTGCGCAAGAAGCCCTTTACAAGGGAGGAAATGCGCCAAGCTTGCTTCGATTATCTTAGTCTTGGAGGTCTATTCTCGGAGGGTCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGACCTTTGAGTCTGGTTCTACATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTGCTGCTACCATTTCCTGCACCTAAACGGATATGGATTGGAGTCCGATTAATTTCTGTAAGTATTAGCAACAGTTTTGTACTTCGTTCTCTAACCTAG
>Glyma.04g048500.1.p sequence-type=predicted peptide transcript=Glyma.04g048500.1 locus=Glyma.04g048500 ID=Glyma.04g048500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MCATGAGTATSLIEEKGIIKGMRYKTKDNKEFSACAPLTIVCDGSSSNLRRSLCNPKVDVPSRFVGLVLENCPCANHSHLILGDPSPVVFYPISSSEVRCLVDVPGQKVPSISNGEMAKYLKTVIAPQIPLELHDAFIAAVDKGNIRTMRNRSKPAASYPTPGAQLMGDAFNMGYLRDLSDAPSLCKYLESFYTLRKKPFTREEMRQACFDYLSLGGLFSEGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPAPKRIWIGVRLISVSISNSFVLRSLT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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