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Report for Sequence Feature Glyma.04g043400

Feature Type:gene_model
Chromosome:Gm04
Start:3486153
stop:3487860
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g043400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G43080.1AT Cyclin A3;1 JGI N/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus JGI N/AIEA
KOG0654 KOG G2/Mitotic-specific cyclin A JGI N/AIEA
PTHR10177Panther CYCLINE JGI N/AIEA
PTHR10177:SF49Panther CYCLIN-A1-1-RELATED JGI N/AIEA
PF00134PFAM Cyclin, N-terminal domain JGI N/AIEA
PF02984PFAM Cyclin, C-terminal domain JGI N/AIEA

Proteins Associated with Glyma.04g043400
LocusGene SymbolProtein Name
CYCA3;1 mitotic cyclin a1-type

Expression Patterns of Glyma.04g043400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g043400 not represented in the dataset
Glyma.04g043400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g043400
ParalogEvidenceComments
Glyma.06g043900 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g043400 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments


Coding sequences of Glyma.04g043400
>Glyma.04g043400.1 sequence-type=CDS polypeptide=Glyma.04g043400.1.p locus=Glyma.04g043400 ID=Glyma.04g043400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGACTCGTGCCGCCGCAAAGAGAAAGGCAAACGCCGCCATCGTAGTGGTTGTCGAAAAACAACACCCCAAAAGGCAGCGTGTTGTGTTGGGTGAACTTCCCAATTTGCAAAACCTTATTGTCTCCAAAATTCAAAATCCGCGCAAAGAAAAACTCCAATGTCGGAAGAATCCCAATGCGAATAAACCATCACCCACAAACAACACCCTTTCTTCCCCTCAGCTCGACGGATCTTATGTTTCGGACATCCACGAGTATCTTCGTGAAATGGAGATGCAGAAAAAGAGAAGACCAATGGTTAACTACATTGAGAAATTTCAGAAAATAGTTACACCAACCATGAGAGGAATATTGGTGGATTGGTTAGTGGAGGTTGCTGAGGAGTACAAGCTTCTCTCGGATACTCTTCATCTCTCTGTTTCATACATCGATAGGTTTTTATCAGTTAATCCAGAAACGGACCCACCAAGTGTGGACGAGTTTTGCAGCATCACTGATAACACGTATGACAAGGCAGAGGTTGTGAAGATGGAAGCTGACATACTCAAGTCCCTAAAGTTTGAAATGGGAAATCCTACTGTAAGCACCTTTCTAAGGAGGTATGCTAATGTTGCTTCTGATGTCCAAAAAACTCCAAATTCGCAGATTGAACATTTGGGCAGCTATATTGGTGAGCTAAGTTTGTTGGACTACGATTGTTTAAGATTCTTGCCTTCTATTGTGGCTGCCTCGGTTATATTTCTTGCCAAGTTCATTATCTGGCCTGAAGTGCATCCTTGGACTTCTTCCTTGTGTGAATGCTCGGGTTACAAGCCAGCTGAATTGAAAGAATGTGTCCTTATCCTGCATGACTTGTATTTGTCAAGAAAGGCAGCGTCCTTCAAAGCTGTTCGGGAGAAATACAAGCATCAAAAGTTCAAATGTGTGGCAAACCTGCCTACCCCTCCATATGTACCGAGTTGTTACTTTGAAGACCAGTGA
Predicted protein sequences of Glyma.04g043400
>Glyma.04g043400.1.p sequence-type=predicted peptide transcript=Glyma.04g043400.1 locus=Glyma.04g043400 ID=Glyma.04g043400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
METRAAAKRKANAAIVVVVEKQHPKRQRVVLGELPNLQNLIVSKIQNPRKEKLQCRKNPNANKPSPTNNTLSSPQLDGSYVSDIHEYLREMEMQKKRRPMVNYIEKFQKIVTPTMRGILVDWLVEVAEEYKLLSDTLHLSVSYIDRFLSVNPETDPPSVDEFCSITDNTYDKAEVVKMEADILKSLKFEMGNPTVSTFLRRYANVASDVQKTPNSQIEHLGSYIGELSLLDYDCLRFLPSIVAASVIFLAKFIIWPEVHPWTSSLCECSGYKPAELKECVLILHDLYLSRKAASFKAVREKYKHQKFKCVANLPTPPYVPSCYFEDQ*






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