Glyma.04g039400

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Report for Sequence Feature Glyma.04g039400

Feature Type:	gene_model
Chromosome:	Gm04
Start:	3120500
stop:	3126002
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g039400

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42920.2	AT	THO complex, subunit 5	JGI	N/A	IEA
GO:0006406	GO-bp	mRNA export from nucleus	EnsemblGenomes	N/A	IEA
GO:0032786	GO-bp	positive regulation of DNA-templated transcription, elongation	EnsemblGenomes	N/A	IEA
GO:0000228	GO-cc	nuclear chromosome	EnsemblGenomes	N/A	IEA
GO:0000445	GO-cc	THO complex part of transcription export complex	EnsemblGenomes	N/A	IEA
GO:0003729	GO-mf	mRNA binding	EnsemblGenomes	N/A	IEA
KOG2216	KOG	Conserved coiled/coiled coil protein	JGI	N/A	IEA
PTHR13375	Panther	FMS INTERACTING PROTEIN	JGI	N/A	IEA
PF09766	PFAM	Fms-interacting protein	JGI	N/A	IEA

Expression Patterns of Glyma.04g039400

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g039400 not represented in the dataset	Glyma.04g039400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g039400

Paralog	Evidence	Comments
Glyma.06g040600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g039400 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g04180	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g039400

Limit To All Plant Sequences

>Glyma.04g039400.2 sequence-type=transcript locus=Glyma.04g039400 ID=Glyma.04g039400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TTTTGGTAGGGTTGTTTTGTCCCTATCAACACCATTTTATTTTTTTTATGTATACATATAAATAAACAGTAGATGTAAAAATGTTTTTTTTTTTTTTTTAATTTAATCATCTCAACATTTCGAAAAATAGAACAAAAGTGAACCTCTGCGACCGCGAGTTACATTGAGAAGACGAAGCCTGAGTGTCCTCCCAGTTCTGATTGCCTTTGTGTTTAAAAGGTGGGAAGCGGAAGAAAAAAGGGGTTTAGGTCAAGGTTGTGACAGAGAAGAGAATCAATGGAAGACGGTGAGATTGAAGAGGGATCAATAGGCGGTGTAGAGGAAGAGGAACAATCACCAGAGCCTCACAAGTCGGAGGAATCGCCCTACCAAATGTTGCGCAACAGCAAGGCCTCCGTACAGAACATTGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTACTTCGAGATCTCGTTACTCAGATGTTCCTACATTTCATCACTCTCCGCCAGGCAAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAAAGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTGCTTCTTGTCCAACGACGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGCAAACTTCATGAGAAATTGGAACAACAAAAGAAAATCCTTTTGGAGACTATTGCAAACCGAAAGAAGTTCCTGACCAGTCTCCCTTCACATCTAAAGTCTCTCAAGAAAGCCTCCTTGCCTGTACAAAACCAGCTAGGGCTTCATCATACAAAGAGATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGAGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCGTGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGACGGAGAAAAAGGCCAAGGAGGGTTCAAGCCAAGGAGAGCCTTGACCAGGGGGGAATATATCAAGTTCACCCACTAAAAATCATTATCCATGTGTATGAAGATGAGGCTTCGGGTCCTAAATCTGCAAAACTCATTACTCTAAGGTTCGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGCTCCAGAGAATGACCTCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACCTCACGTCCTTATAGATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGATGTCTCCCTTGCTTCTTACTGACAACAGTGGAGCAGCCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCGACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTAGAGTGGCCTCGTTTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGACAGTTGGTCACCTGTAAAACTTCCACCTGTACCTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAAGAGCATATTCAGGAAGCAATGGATGCTGATGTAATTGAACGATCTGGTGCCACAAAAGCAGAACCAGAGAGTATAACAGAAGATGGGGAGCTTCCAACGTTGCTTCCTAAAGTGTCTAAGCTTGGCCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCGTTCCTCCACTCAATAAAATCAGATTGAACAAGAACATGAAAAATCCAATTATCATGCCAGAAAGTCTGTTTCATGGATGAATTACGGGCTCAAGGAATTTCACTTAGTTATTTGCAGAAAAATCGGTACAGATGAGAGCAATTTGAATTTAGAAGCCAAGATCCAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTCTATTGAGCATTAGTTGTATATCGTCTGGGGAAAACCATGATGAGACAGGATTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGAGGTCAATCTACACTTACTAAAGATGTTAACTGTCAATCAAAAAAATTTTGTATTGGCTCATCAAGTGAGTTGTCTTGCTATGTTGTTTGACTATTATTTGGATGAGGCATCCCCATCATCTGAAAGGACAAATTGTACTTCCGTGGTTGATGTTGGCTTATGCAAGCCTGTTTCTGGTAGATTCCTGGGTAGATCTTTTAGAGGAAGGGATCGCAGGAAGATGATCTCATGGAAAGACATGAAACTTAATTCCAGCTGTATCTAATAGTGGTAGGTTCCTGTCTGGATCTTCCAGAGGGTAGGATCAAATTGATCTTATGTGAAGATACCCCTCCAAATTGTCCCAAGCAGGAATGTTCAGCTTTGGAGGTGACAAATGGATGCTACGGAATATGGTACCGCAAGGATAATGATGTTGTACCTCTGTAATATGCGTTGAGCCAACCGTGCAACTTCATTGTTCTTGACTCTACAACCAAAAAACTGACTGGGATACTATGATAGATTTTGAAGGGGTCATTTTTGGTGTTTGAGTGTTTGTTATTATGCTTTAATTTCTGGCAAATGCAGCTAGTTGGGTTCCAGTATAAGAGCAGGCATCATGGGTGGAATTTAAGAGTTGTACATTACTAAGGTCTACTACATAGTTGTTGTAGACTTGTAGTATTTTCTTTTATTGGTTATATTTAATTCTTTCCATTCTGAATCCGAGATTCCCTAGCAAAGACGAGATGATTTCCTGTCAGCGGAATTTTTAAGAATAAAGGACATTATTACAACAAGTAGGTTGTATTGTATGTTACTGCA

Coding sequences of Glyma.04g039400

Limit To All Plant Sequences

>Glyma.04g039400.1 sequence-type=CDS polypeptide=Glyma.04g039400.1.p locus=Glyma.04g039400 ID=Glyma.04g039400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGACGGTGAGATTGAAGAGGGATCAATAGGCGGTGTAGAGGAAGAGGAACAATCACCAGAGCCTCACAAGTCGGAGGAATCGCCCTACCAAATGTTGCGCAACAGCAAGGCCTCCGTACAGAACATTGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTACTTCGAGATCTCGTTACTCAGATGTTCCTACATTTCATCACTCTCCGCCAGGCAAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAAAGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTGCTTCTTGTCCAACGACGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGCAAACTTCATGAGAAATTGGAACAACAAAAGAAAATCCTTTTGGAGACTATTGCAAACCGAAAGAAGTTCCTGACCAGTCTCCCTTCACATCTAAAGTCTCTCAAGAAAGCCTCCTTGCCTGTACAAAACCAGCTAGGGCTTCATCATACAAAGAGATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGAGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCGTGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGACGGAGAAAAAGGCCAAGGAGGGTTCAAGCCAAGGAGAGCCTTGACCAGGGGGGAATATATCAAGTTCACCCACTAAAAATCATTATCCATGTGTATGAAGATGAGGCTTCGGGTCCTAAATCTGCAAAACTCATTACTCTAAGGTTCGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGCTCCAGAGAATGACCTCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACCTCACGTCCTTATAGATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGATGTCTCCCTTGCTTCTTACTGACAACAGTGGAGCAGCCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCGACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTAGAGTGGCCTCGTTTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGACAGTTGGTCACCTGTAAAACTTCCACCTGTACCTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAAGAGCATATTCAGGAAGCAATGGATGCTGATGTAATTGAACGATCTGGTGCCACAAAAGCAGAACCAGAGAGTATAACAGAAGATGGGGAGCTTCCAACGTTGCTTCCTAAAGTGTCTAAGCTTGGCCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCGTTCCTCCACTCAATAAAATCAGGTCACAAAGTTTCAAAAAGATTGATGATAGTTCTGATTTCTTGCTGGATACTGAAAGTGATCTTGATGAGCCGGCACAGATTGAACAAGAACATGAAAAATCCAATTATCATGCCAGAAAGTCTGTTTCATGGATGAATTACGGGCTCAAGGAATTTCACTTAGTTATTTGCAGAAAAATCGGTACAGATGAGAGCAATTTGAATTTAGAAGCCAAGATCCAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTCTATTGAGCATTAGTTGTATATCGTCTGGGGAAAACCATGATGAGACAGGATTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGAGGTCAATCTACACTTACTAAAGATGTTAACTGTCAATCAAAAAAATTTTGTATTGGCTCATCAAGTGAGTTGTCTTGCTATGTTGTTTGACTATTATTTGGATGAGGCATCCCCATCATCTGAAAGGACAAATTGTACTTCCGTGGTTGATGTTGGCTTATGCAAGCCTGTTTCTGGTAGATTCCTGGGTAGATCTTTTAGAGGAAGGGATCGCAGGAAGATGATCTCATGGAAAGACATGAAACTTAATTCCAGCTGTATCTAA

>Glyma.04g039400.2 sequence-type=CDS polypeptide=Glyma.04g039400.2.p locus=Glyma.04g039400 ID=Glyma.04g039400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAAGACGGTGAGATTGAAGAGGGATCAATAGGCGGTGTAGAGGAAGAGGAACAATCACCAGAGCCTCACAAGTCGGAGGAATCGCCCTACCAAATGTTGCGCAACAGCAAGGCCTCCGTACAGAACATTGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTACTTCGAGATCTCGTTACTCAGATGTTCCTACATTTCATCACTCTCCGCCAGGCAAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAAAGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTGCTTCTTGTCCAACGACGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGCAAACTTCATGAGAAATTGGAACAACAAAAGAAAATCCTTTTGGAGACTATTGCAAACCGAAAGAAGTTCCTGACCAGTCTCCCTTCACATCTAAAGTCTCTCAAGAAAGCCTCCTTGCCTGTACAAAACCAGCTAGGGCTTCATCATACAAAGAGATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGCTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGAGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCGTGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGACGGAGAAAAAGGCCAAGGAGGGTTCAAGCCAAGGAGAGCCTTGACCAGGGGGGAATATATCAAGTTCACCCACTAAAAATCATTATCCATGTGTATGAAGATGAGGCTTCGGGTCCTAAATCTGCAAAACTCATTACTCTAAGGTTCGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGCTCCAGAGAATGACCTCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACCTCACGTCCTTATAGATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGATGTCTCCCTTGCTTCTTACTGACAACAGTGGAGCAGCCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCGACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTAGAGTGGCCTCGTTTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGACAGTTGGTCACCTGTAAAACTTCCACCTGTACCTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAAGAGCATATTCAGGAAGCAATGGATGCTGATGTAATTGAACGATCTGGTGCCACAAAAGCAGAACCAGAGAGTATAACAGAAGATGGGGAGCTTCCAACGTTGCTTCCTAAAGTGTCTAAGCTTGGCCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCGTTCCTCCACTCAATAAAATCAGATTGAACAAGAACATGAAAAATCCAATTATCATGCCAGAAAGTCTGTTTCATGGATGA

Predicted protein sequences of Glyma.04g039400

Limit To All Plant Sequences

>Glyma.04g039400.1.p sequence-type=predicted peptide transcript=Glyma.04g039400.1 locus=Glyma.04g039400 ID=Glyma.04g039400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGEIEEGSIGGVEEEEQSPEPHKSEESPYQMLRNSKASVQNIVADMLSIKKEGKPKQLLRDLVTQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFKSKYPDIDLVPEEDFFRDAPQDIQDCFLSNDAAHNLMLRRLNFELFQRKELCKLHEKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKRLKQHHSAELLPPALYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDTDISTTVESSKLEDDAPDEEEDGQRRRKRPRRVQAKESLDQGGIYQVHPLKIIIHVYEDEASGPKSAKLITLRFEYLVKLNVVCVGIEGSNDAPENDLLCNLFPNDTGLELPHQSAKLFVQDAITFNTQRTSRPYRWAQHLAGIDFLPEMSPLLLTDNSGAAKNENVISGLSLYRQQNRVPTVLQRIRARRKAQLALLEQLESLTKLEWPRLPCKSVPWALHTPLCNLDSWSPVKLPPVPRESSSPAVIDKEEHIQEAMDADVIERSGATKAEPESITEDGELPTLLPKVSKLGLSAQLNLISKSIVPPLNKIRSQSFKKIDDSSDFLLDTESDLDEPAQIEQEHEKSNYHARKSVSWMNYGLKEFHLVICRKIGTDESNLNLEAKIQISMEYPLRPPLFLLSISCISSGENHDETGLEWYNELRAMEAEVNLHLLKMLTVNQKNFVLAHQVSCLAMLFDYYLDEASPSSERTNCTSVVDVGLCKPVSGRFLGRSFRGRDRRKMISWKDMKLNSSCI*

>Glyma.04g039400.2.p sequence-type=predicted peptide transcript=Glyma.04g039400.2 locus=Glyma.04g039400 ID=Glyma.04g039400.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEDGEIEEGSIGGVEEEEQSPEPHKSEESPYQMLRNSKASVQNIVADMLSIKKEGKPKQLLRDLVTQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACKDFKSKYPDIDLVPEEDFFRDAPQDIQDCFLSNDAAHNLMLRRLNFELFQRKELCKLHEKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKRLKQHHSAELLPPALYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDTDISTTVESSKLEDDAPDEEEDGQRRRKRPRRVQAKESLDQGGIYQVHPLKIIIHVYEDEASGPKSAKLITLRFEYLVKLNVVCVGIEGSNDAPENDLLCNLFPNDTGLELPHQSAKLFVQDAITFNTQRTSRPYRWAQHLAGIDFLPEMSPLLLTDNSGAAKNENVISGLSLYRQQNRVPTVLQRIRARRKAQLALLEQLESLTKLEWPRLPCKSVPWALHTPLCNLDSWSPVKLPPVPRESSSPAVIDKEEHIQEAMDADVIERSGATKAEPESITEDGELPTLLPKVSKLGLSAQLNLISKSIVPPLNKIRLNKNMKNPIIMPESLFHG*

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