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Report for Sequence Feature Glyma.04g038500

Feature Type:gene_model
Chromosome:Gm04
Start:3058143
stop:3063164
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g038500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33330.2AT plant glycogenin-like starch initiation protein 3 JGI N/AIEA
GO:0009834GO-bp plant-type secondary cell wall biogenesis EnsemblGenomesN/AIEA
GO:0045492GO-bp xylan biosynthetic process EnsemblGenomesN/AIEA
GO:0005794GO-cc Golgi apparatus EnsemblGenomesN/AIEA
GO:0015020GO-mf glucuronosyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups EnsemblGenomesN/AIEA
GO:0016757GO-mf transferase activity, transferring glycosyl groups JGI N/AIEA
KOG1950 KOG Glycosyl transferase, family 8 - glycogenin JGI N/AIEA
PTHR11183Panther GLYCOGENIN JGI N/AIEA
PTHR11183:SF1Panther JGI N/AIEA
PF01501PFAM Glycosyl transferase family 8 JGI N/AIEA
GN7V-66825SoyCyc9-rxn glucuronosyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g038500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g038500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g04080 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g038500
>Glyma.04g038500.1 sequence-type=CDS polypeptide=Glyma.04g038500.1.p locus=Glyma.04g038500 ID=Glyma.04g038500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCAAGGTTCTAGTCTTAAAAAGATGCTGAAGACAATGCCATCTAAAGCTTCGATTACCAGAATCAATTTGGTCTTCCTTGTTGTATTTCTGGTTGTTTATGCCACTGTTCTTCCCCATCCATCTTCTGACTATTTGCAGGATGCAGGATCCATAGTGAGGTGCTCTTTGGGCGAATGTCATCACAGGGTAAGACACGAAAACTTCAAAATGAAAGCGGCATTGGATGAACCTCAAGCAAACCCACAGAGGCAAAAGAATAAGAGTGCAAAGAAGATAGAAGTACCAAGCTTTTTTAGCAAGTTAGGGGAAAGAATGAAGATTGGAATGGTAAACATGAAAGAAAACGATGTAAGTAACTGGAGCACGCATGGGGAAAGGACAAGCGTTTATTTTGAGAGGGTATCGCAGTTTTTGAACTGGACGGACTTGTTTCCCGAATGGATAGACGAGGAGGAAGAGAATGATGTGCCATCATGTCCAGAGATACCTATGCCGGAGTATGCAGAATACGGAAGCATGGACGTGATCGTGGCTAAGCTGCCATGCAGGTATCCCGAAGAAGGGTGGAAGAGGGACGTTTTCCGGTTGCAAGTTCATCTTATAGTTGCGAATCTAGCCGTGAAGAAGGGGAAGAAGGATTGGAGAGGGAAGACAAGAGTAGTTTTTTGGAGCAAGTGTAGACCAATGCTGGAGCTGTTTCCATGCGACAACTTGGTTAAGGGTGAAGGTGAATGGTGGTATTATGAACCTGAGGTGAAGAGGTTAGAACACAAGGTTTCATTGCCCATTGGGTCCTGCAAGTTGGCCTTGCCTCTCTGGGAACAAGTTGTCGACGAGGTGTACGAATTATCCAAGATTGAGAAAAGCGTTGAAAGCAGAAGGAGAATAAAACGCGAAGCGTACGCAACAGTGCTGCATTCTTCGGAAGCGTACGTTTGCGGCGCAATAACACTAGCGCAAAGCCTGCTCCAAACAGGTACCAAACGCGACCTTATCCTCCTGATAGACAAGTTCATCTCGGTTCGTAAACGCGAGGCCCTATCCGAAGCGGGTTGGAAGATCCGAATCATCACCCGGATCCGAAACCCGAAGGCCGAGAAAGGAAGCTACAACGAATACAACTACAGCAAGTTCAGGCTATGGCAGCTCACGGACTACGACAAAGTAATCTTCATCGACTCCGACATCATCGTACTCCGAAACCTCGACATCCTCTTCCACTTCCCGCAGATAACGGCCACGGGGAACGACCAATCGATATTCAACTCGGGAATAATGGTGATCGAACCTTCCAAGTGCACGTTCCGTACATTGATGCGGCACCGGGACGACGTCGTTTCGTACAACGGAGGGGACCAGGGGTTTCTGAACGAGGTGTTCGTGTGGTGGCACAGGCTGCCGCGGAGGGTGAACTTTCTGAAGAACTTCTGGGCGAACACGACGGTGGAGGCGAGGGCGAAGAACGCGTTGTTCGCGGCGGAGCCGGCGGAGGTCTACGCGATTCACTACCTGGGATGGAAGCCGTGGCACTGCTACAGGGACTATGACTGCAACTGGGACACCCCGGAGCAGAGGGTGTACGCCAGTGACGTGGCGCATCGGAGGTGGTGGAAGGTTCACGACGCGATGGAGGAGGGGTTGCAGAGGTTGTGTAGGTTGACGAAACGGCGTCGGAGTGAGTTGAACTGGGAGAGGAGGAAGGCCAGCAAGATGAGGTTACCCGATGGACATTGGAAAATCAATATCACTGATCCCAGACGATTTGCCTCTCTCTTTATGGATTAG
Predicted protein sequences of Glyma.04g038500
>Glyma.04g038500.1.p sequence-type=predicted peptide transcript=Glyma.04g038500.1 locus=Glyma.04g038500 ID=Glyma.04g038500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MQGSSLKKMLKTMPSKASITRINLVFLVVFLVVYATVLPHPSSDYLQDAGSIVRCSLGECHHRVRHENFKMKAALDEPQANPQRQKNKSAKKIEVPSFFSKLGERMKIGMVNMKENDVSNWSTHGERTSVYFERVSQFLNWTDLFPEWIDEEEENDVPSCPEIPMPEYAEYGSMDVIVAKLPCRYPEEGWKRDVFRLQVHLIVANLAVKKGKKDWRGKTRVVFWSKCRPMLELFPCDNLVKGEGEWWYYEPEVKRLEHKVSLPIGSCKLALPLWEQVVDEVYELSKIEKSVESRRRIKREAYATVLHSSEAYVCGAITLAQSLLQTGTKRDLILLIDKFISVRKREALSEAGWKIRIITRIRNPKAEKGSYNEYNYSKFRLWQLTDYDKVIFIDSDIIVLRNLDILFHFPQITATGNDQSIFNSGIMVIEPSKCTFRTLMRHRDDVVSYNGGDQGFLNEVFVWWHRLPRRVNFLKNFWANTTVEARAKNALFAAEPAEVYAIHYLGWKPWHCYRDYDCNWDTPEQRVYASDVAHRRWWKVHDAMEEGLQRLCRLTKRRRSELNWERRKASKMRLPDGHWKINITDPRRFASLFMD*






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