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Report for Sequence Feature Glyma.04g037000

Feature Type:gene_model
Chromosome:Gm04
Start:2935896
stop:2943750
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g037000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G26540.1AT uroporphyrinogen-III synthase family protein JGI N/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process EnsemblGenomesN/AIEA
GO:0033014GO-bp tetrapyrrole biosynthetic process JGI N/AIEA
GO:0004852GO-mf uroporphyrinogen-III synthase activity EnsemblGenomesN/AIEA
GO:0004852GO-mf uroporphyrinogen-III synthase activity JGI N/AIEA
PF02602PFAM Uroporphyrinogen-III synthase HemD JGI N/AIEA
PWY-5188SoyCyc9 tetrapyrrole biosynthesis I (from glutamate) Plant Metabolic Network ISS
PWY-5918SoyCyc9 superpathay of heme b biosynthesis from glutamate Plant Metabolic Network ISS
GN7V-58710SoyCyc9-rxn uroporphyrinogen-III synthase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g037000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g037000
ParalogEvidenceComments
Glyma.06g037300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g037000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g03940 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g037000
>Glyma.04g037000.2 sequence-type=transcript locus=Glyma.04g037000 ID=Glyma.04g037000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACCAAATTAATCCTAATTTAACCAGGGGTGTAATTCATGAATAAAATAACCTAGAGCCACTTCCTTTGTTCAACACGTTCCAATAATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGccgcttcctcttctacttcctcttccgcttcGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGAGAGTTGATCATGTTTGGATTCAATATGTCAATTCGATGTAAAGGGGATTCATGTGTTAAACTTGATGCGTCCAATGACTGTTTCATACTCACTATCCTGGGATGCTGTTTTTGTCCCTTTGTTAATCAAGCGTCATAATGGCTCCTGTGCCTGGAAGAATCTTCTTTCAGATTCTGAGTGGAACAATTCTGTTGCATGCATTGGTGAGACAACTGCTACAATGGCAAGAAGTTTAGGTTTCACAAATGTGTACTATCCAGCACAACCAGGCATCGAAGGCTGGGTAGAAAGCATTCTTGAAGCATTAGGTTCCTATGATGAATTATTGAGGTAGGTCTCAGCTCTTTGTAGCAACCTGGAGATGTTTTCAACTGTTTCTCTCATGCTGCAAGATTAATATAATGATTTGGCATCGTGGATGGATATACTCTCTGTTCAGTAGTAGTATTTTTAAAGATACATTTAGCTTCAATAAAGTAAGGAGAGTGTAGTGTATATTAGGAAATAAAGTGCACTTATCGTCATTGATTAAAATATAAATATTTTTGTAATTAATTTCAAAGTTTGTTATACATGCACTTGTTTTTAATCACAAATTCTAACCATTATTTTTTTA

>Glyma.04g037000.3 sequence-type=transcript locus=Glyma.04g037000 ID=Glyma.04g037000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACCAAATTAATCCTAATTTAACCAGGGGTGTAATTCATGAATAAAATAACCTAGAGCCACTTCCTTTGTTCAACACGTTCCAATAATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGccgcttcctcttctacttcctcttccgcttcGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGAGAGTTGATCATGTTTGGATTCAATATGTCAATTCGATGTAAAGGGGATTCATGTGTTAAACTTGATGCGTCCAATGACTGTTTCATACTCACTATCCTGGGATGCTGTTTTTGTCCCTTTGTTAATCAAGCGTCATAATGGCTCCTGGTATTGTATGAATCATGGAAAGCTTTCTTTATCTTCTTATTTGTGCTGTAGAAATAGGTAGGACATTTTCTTAGGAGGTTGTACTTCATTTAGTATTTACTCAGTTTTTCCCCCTTGAGATAATTTATCTAGTTCAGATAACCTGCTGCAACAGTGCCTGGAAGAATCTTCTTTCAGATTCTGAGTGGAACAATTCTGTTGCATGCATTGGTGAGACAACTGCTACAATGGCAAGAAGTTTAGGTTTCACAAATGTGTACTATCCAGCACAACCAGGCATCGAAGGGTAATCAAAATTCACTTTTTAGAAATTCTTTTTTGGGATCTTTGCTGTGATATTTCTCTGAATAGTATCGTAGTATTCAGTACTTTGTTTACATGCTTACTGCTTAGTAGTGTTCACTGTCTGGTCACATGGAGGTTTTACAAGCTCTTCTGATTTTGGAATATAGTAGGCTCATACCACTTAAGAATGACTCTAGTTTTAATAATTTATCTTTAATCTAAATTCATATATTTCATTCATTT

>Glyma.04g037000.4 sequence-type=transcript locus=Glyma.04g037000 ID=Glyma.04g037000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
CACCAAATTAATCCTAATTTAACCAGGGGTGTAATTCATGAATAAAATAACCTAGAGCCACTTCCTTTGTTCAACACGTTCCAATAATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGccgcttcctcttctacttcctcttccgcttcGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGGGGATTCATGTGTTAAACTTGATGCGTCCAATGACTGTTTCATACTCACTATCCTGGGATGCTGTTTTTGTCCCTTTGTTAATCAAGCGTCATAATGGCTCCTGGTATTGTATGAATCATGGAAAGCTTTCTTTATCTTCTTATTTGTGCTGTAGAAAT
Coding sequences of Glyma.04g037000
>Glyma.04g037000.1 sequence-type=CDS polypeptide=Glyma.04g037000.1.p locus=Glyma.04g037000 ID=Glyma.04g037000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGCCGCTTCCTCTTCTACTTCCTCTTCCGCTTCGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGTGCCTGGAAGAATCTTCTTTCAGATTCTGAGTGGAACAATTCTGTTGCATGCATTGGTGAGACAACTGCTACAATGGCAAGAAGTTTAGGTTTCACAAATGTGTACTATCCAGCACAACCAGGCATCGAAGGCTGGGTAGAAAGCATTCTTGAAGCATTAGGTTCCTATGATGAATTATTGAGGTAG

>Glyma.04g037000.2 sequence-type=CDS polypeptide=Glyma.04g037000.2.p locus=Glyma.04g037000 ID=Glyma.04g037000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGCCGCTTCCTCTTCTACTTCCTCTTCCGCTTCGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGAGAGTTGATCATGTTTGGATTCAATATGTCAATTCGATGTAAAGGGGATTCATGTGTTAAACTTGATGCGTCCAATGACTGTTTCATACTCACTATCCTGGGATGCTGTTTTTGTCCCTTTGTTAATCAAGCGTCATAA

>Glyma.04g037000.3 sequence-type=CDS polypeptide=Glyma.04g037000.3.p locus=Glyma.04g037000 ID=Glyma.04g037000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGCCGCTTCCTCTTCTACTTCCTCTTCCGCTTCGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGAGAGTTGATCATGTTTGGATTCAATATGTCAATTCGATGTAAAGGGGATTCATGTGTTAAACTTGATGCGTCCAATGACTGTTTCATACTCACTATCCTGGGATGCTGTTTTTGTCCCTTTGTTAATCAAGCGTCATAA

>Glyma.04g037000.4 sequence-type=CDS polypeptide=Glyma.04g037000.4.p locus=Glyma.04g037000 ID=Glyma.04g037000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGCCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTCCCACCTCGCCGCCGAATCTTTCTCGCTCCTCCCCGAACCGCCGCATCTTCCGCCACCGACGCCGCTTCCTCTTCTACTTCCTCTTCCGCTTCGAATTTCGCTCCCAAAGTCGTCGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCCGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCTCTCATTGAGCACATTCAAGGACCTGATTTAGGCAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCAGAGGCAGGTTCTGTCTTTCTAGAGGCATGGAGATCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGTACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCAAACCGATCAATTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAATAAATGCACCGTTCTCTATCCTGCTTCTGCAAAGGCTAGCAATGAGATTGAGGAAGGACTTTCAAACCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGGGGATTCATGTGTTAA
Predicted protein sequences of Glyma.04g037000
>Glyma.04g037000.1.p sequence-type=predicted peptide transcript=Glyma.04g037000.1 locus=Glyma.04g037000 ID=Glyma.04g037000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPHFSLSPLSCAPSPLPPRRRIFLAPPRTAASSATDAASSSTSSSASNFAPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHIQGPDLGRLPSVLGDNAFDWVVITSPEAGSVFLEAWRSSGMPHVKIGVVGAGTASIFKEALQSSNRSIDIAFVPSKATGKVLATELPKIGNKCTVLYPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRAWKNLLSDSEWNNSVACIGETTATMARSLGFTNVYYPAQPGIEGWVESILEALGSYDELLR*

>Glyma.04g037000.2.p sequence-type=predicted peptide transcript=Glyma.04g037000.2 locus=Glyma.04g037000 ID=Glyma.04g037000.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPHFSLSPLSCAPSPLPPRRRIFLAPPRTAASSATDAASSSTSSSASNFAPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHIQGPDLGRLPSVLGDNAFDWVVITSPEAGSVFLEAWRSSGMPHVKIGVVGAGTASIFKEALQSSNRSIDIAFVPSKATGKVLATELPKIGNKCTVLYPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRELIMFGFNMSIRCKGDSCVKLDASNDCFILTILGCCFCPFVNQAS*

>Glyma.04g037000.3.p sequence-type=predicted peptide transcript=Glyma.04g037000.3 locus=Glyma.04g037000 ID=Glyma.04g037000.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPHFSLSPLSCAPSPLPPRRRIFLAPPRTAASSATDAASSSTSSSASNFAPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHIQGPDLGRLPSVLGDNAFDWVVITSPEAGSVFLEAWRSSGMPHVKIGVVGAGTASIFKEALQSSNRSIDIAFVPSKATGKVLATELPKIGNKCTVLYPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRELIMFGFNMSIRCKGDSCVKLDASNDCFILTILGCCFCPFVNQAS*

>Glyma.04g037000.4.p sequence-type=predicted peptide transcript=Glyma.04g037000.4 locus=Glyma.04g037000 ID=Glyma.04g037000.4.Wm82.a2.v1 annot-version=Wm82.a2.v1
MPHFSLSPLSCAPSPLPPRRRIFLAPPRTAASSATDAASSSTSSSASNFAPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHIQGPDLGRLPSVLGDNAFDWVVITSPEAGSVFLEAWRSSGMPHVKIGVVGAGTASIFKEALQSSNRSIDIAFVPSKATGKVLATELPKIGNKCTVLYPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRGFMC*






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