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Report for Sequence Feature Glyma.04g036400

Feature Type:gene_model
Chromosome:Gm04
Start:2883991
stop:2890153
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g036400
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G80260.1AT Spc97 / Spc98 family of spindle pole body (SBP) component JGI N/AIEA
GO:0000226GO-bp microtubule cytoskeleton organization EnsemblGenomesN/AIEA
GO:0000226GO-bp microtubule cytoskeleton organization JGI N/AIEA
GO:0007020GO-bp microtubule nucleation EnsemblGenomesN/AIEA
GO:0031122GO-bp cytoplasmic microtubule organization EnsemblGenomesN/AIEA
GO:0051321GO-bp meiotic cell cycle EnsemblGenomesN/AIEA
GO:0051415GO-bp microtubule nucleation by interphase microtubule organizing center EnsemblGenomesN/AIEA
GO:0090307GO-bp mitotic spindle assembly EnsemblGenomesN/AIEA
GO:0000922GO-cc spindle pole EnsemblGenomesN/AIEA
GO:0000922GO-cc spindle pole JGI N/AIEA
GO:0000923GO-cc equatorial microtubule organizing center EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0005815GO-cc microtubule organizing center EnsemblGenomesN/AIEA
GO:0005815GO-cc microtubule organizing center JGI N/AIEA
GO:0005856GO-cc cytoskeleton EnsemblGenomesN/AIEA
GO:0005874GO-cc microtubule EnsemblGenomesN/AIEA
GO:0008274GO-cc gamma-tubulin ring complex EnsemblGenomesN/AIEA
GO:0005200GO-mf structural constituent of cytoskeleton EnsemblGenomesN/AIEA
GO:0043015GO-mf gamma-tubulin binding EnsemblGenomesN/AIEA
GO:0051011GO-mf microtubule minus-end binding EnsemblGenomesN/AIEA
PTHR19302Panther GAMMA TUBULIN COMPLEX PROTEIN JGI N/AIEA
PTHR19302:SF9Panther JGI N/AIEA
PF04130PFAM Spc97 / Spc98 family JGI N/AIEA

Expression Patterns of Glyma.04g036400
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g036400 not represented in the dataset
Glyma.04g036400 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g036400
ParalogEvidenceComments
Glyma.06g036500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.


Coding sequences of Glyma.04g036400
>Glyma.04g036400.1 sequence-type=CDS polypeptide=Glyma.04g036400.1.p locus=Glyma.04g036400 ID=Glyma.04g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGAGGTGCAGGATACAATATGGGAGGTGTAGGAAGGAAATGTTGGGGTACAATCCAAATCGGCCCGTGCGCTGCCCAATTGATACGCGTGTCCTCTCGGGCAGACTCAGTGGTGCGAGGTGTTCTACGAATGCTGCAAGGGTTTTCTGGTCCCCCATTCTTTTGGGATAAAAATGCAAACATTTTCCGTGCAAAGAGCGGAGTGTACGTTAGTCATCTCTCACAGAAAAGTCTTCACTCTCTGCTCAATCAGTTTATCCACGCAGCCACGTGTCTCCAATTGGTGGCTATTACACTCAACAAAGTCGAAACCGCAGTGCCAAAATCTCCTCCTACTTTGAACGCATTTGTGTGCCTCAAGGGGTTGCGGAATATTGCCTTGAAGGAGGAAACGTCCACCAGCAATGCAGATTGTGTAACCACCCCAACCTTGTTAGGATTGGCTAATTCCTTATCGAGTCTTTGCTCAGGCGCTGAGTTCCTATTTGGAGTGGTGCATGAGGCTATTCCTGCTGTATACTTTGAGTTTGGTCTGTCTGTACCGGCAGCAGAACTCACAGTTCATGTGCTTGACTACCTTCATAAGAAGCTTGACGAAGTGTGTCTTGTACAAGGTGGTGAGGAAGCTTATCAGATGGTGCTTTATATGTATGTTGGAAGCTTGTTGCCATACATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATTCTTGATGATCCTTTTGGTGAGATGTCCTTTTTTACTGATAAAGAAGTCTCAGTTGATGAGGCTGAGTTCTGGGAGAAGAGTTATTTGTTAAGAAGGCTACAGCATAGCAAATTAGATTCAGAATTCTTCTCTTCCACGAATTATGTCAATGATCCTGTGCCAGCATCAAATGACAAGGAAATGGATAGGAGAATTCCATCTCTTTGTCTAGTACAAATGGCTGGGTTAACGTTGCCCGAAGGTTTTTCTGTATCACTAGTTGGATTTGTTGGTCATGGCGACCATGTTTGTAAGTACTTTTGGCAAAACAACTGGTATGAATCTGTATCTTTTTCTTCCAATGTATCTCATGTAAATGAGGAAAAACCAGATAATGACAATAATGAAAAATTAATTGCTCCACCTTACTCAAAAAAGACATGGTATAAAGAGCTGAGAGGGGCTAGAGCTATTGATGACGAAGTGCTTCTCTTGAGGTCATACATAGAAAATCAAGTTATTACTGGTTTAAGAAAGGCTATATTTGGTGGAGAAAATGCTGCATTTTCTGATAGTGAAGGAATGAACTATACTTTTGGCTTTCACTTTGGTGAATCTGAATACCTTCGCTCACAGGATGACAGAAAGCTGTTAGAAATGTTGTTTCCTTTTCCCACTATATTGCCTTTGTTTCAGGATGATCTTCCCGTGTCAGAGCTCTTGCCTTTTCAGAGAAACAGCAGTCTTATTTCAAGAGTTCTTCATTGGATGCAAAATGTTGACCTAAGAACTACTCCACTTCCTCTGGTTATTATGCAGTACTGCCTAACCGTCTACATTCAGAAGCAGAGAACAGGTGTTGATATTTTGTCTTGTGCAGGTGATTTGCTGCAACACTTTTTGACTGTAATTTTCAACAAGTTGGATAAGGGTGAAGCATGGGATGATGATTTTGAGTTAAACACAACATTACAGGAATCAATCAGAAATTCTGCTGATTGTATGCTGTTAAGTGCTCCAGACTCATTGGTAGTGTCGATAACCAAAAATCATGTTGACAGTGATGAGGAAGCTAGCACAGCTGGTGTTGTTTTGAGTACGCCTCCTCAAAGTCATGTCAATAGCTTTGGAATTAATGGCCTTGATATGCTCAAATTCACGTATAGGGTTCCTTGGCCTCTTGAACTCATTGCAAATACTGAGGCAATTAAGAAGTACAACCAGGGTAAGGGATCTGCTACAAACAACAGAAAGCATCATTGGTTAGTGGAGCAGAAACTCCTTCATTTTGTGGATGCTTTTCACCAATATGTTATGGATCGGGGAACCTGA
Predicted protein sequences of Glyma.04g036400
>Glyma.04g036400.1.p sequence-type=predicted peptide transcript=Glyma.04g036400.1 locus=Glyma.04g036400 ID=Glyma.04g036400.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGGAGYNMGGVGRKCWGTIQIGPCAAQLIRVSSRADSVVRGVLRMLQGFSGPPFFWDKNANIFRAKSGVYVSHLSQKSLHSLLNQFIHAATCLQLVAITLNKVETAVPKSPPTLNAFVCLKGLRNIALKEETSTSNADCVTTPTLLGLANSLSSLCSGAEFLFGVVHEAIPAVYFEFGLSVPAAELTVHVLDYLHKKLDEVCLVQGGEEAYQMVLYMYVGSLLPYIEGLDSWLFEGILDDPFGEMSFFTDKEVSVDEAEFWEKSYLLRRLQHSKLDSEFFSSTNYVNDPVPASNDKEMDRRIPSLCLVQMAGLTLPEGFSVSLVGFVGHGDHVCKYFWQNNWYESVSFSSNVSHVNEEKPDNDNNEKLIAPPYSKKTWYKELRGARAIDDEVLLLRSYIENQVITGLRKAIFGGENAAFSDSEGMNYTFGFHFGESEYLRSQDDRKLLEMLFPFPTILPLFQDDLPVSELLPFQRNSSLISRVLHWMQNVDLRTTPLPLVIMQYCLTVYIQKQRTGVDILSCAGDLLQHFLTVIFNKLDKGEAWDDDFELNTTLQESIRNSADCMLLSAPDSLVVSITKNHVDSDEEASTAGVVLSTPPQSHVNSFGINGLDMLKFTYRVPWPLELIANTEAIKKYNQGKGSATNNRKHHWLVEQKLLHFVDAFHQYVMDRGT*






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