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Report for Sequence Feature Glyma.04g035000

Feature Type:gene_model
Chromosome:Gm04
Start:2793125
stop:2795315
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g035000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G42650.1AT allene oxide synthase JGI N/AIEA
GO:0006952GO-bp defense response EnsemblGenomesN/AIEA
GO:0009695GO-bp jasmonic acid biosynthetic process EnsemblGenomesN/AIEA
GO:0016125GO-bp sterol metabolic process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process EnsemblGenomesN/AIEA
GO:0055114GO-bp oxidation-reduction process JGI N/AIEA
GO:0009535GO-cc chloroplast thylakoid membrane EnsemblGenomesN/AIEA
GO:0009941GO-cc chloroplast envelope EnsemblGenomesN/AIEA
GO:0004497GO-mf monooxygenase activity EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding EnsemblGenomesN/AIEA
GO:0005506GO-mf iron ion binding JGI N/AIEA
GO:0009055GO-mf electron carrier activity JGI N/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen EnsemblGenomesN/AIEA
GO:0016705GO-mf oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen JGI N/AIEA
GO:0020037GO-mf heme binding EnsemblGenomesN/AIEA
GO:0020037GO-mf heme binding JGI N/AIEA
GO:0046872GO-mf metal ion binding EnsemblGenomesN/AIEA
KOG0159 KOG Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies JGI N/AIEA
PF00067PFAM Cytochrome P450 JGI N/AIEA
PWY-735SoyCyc9 jasmonic acid biosynthesis Plant Metabolic Network ISS
GN7V-50815SoyCyc9-rxn hydroperoxide dehydratase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g035000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Gene model name correspondences to Glyma.04g035000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g03740 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g035000
>Glyma.04g035000.1 sequence-type=CDS polypeptide=Glyma.04g035000.1.p locus=Glyma.04g035000 ID=Glyma.04g035000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACATCAATTACCTCTGCATCCCTTCCTTTGCTGCAACTCCAATCTTCATTGAAGAGAAAACCCTGCAACTTGAAGAGCTCCACCACCATGCGTCGTTTTACAACCAAAGCCTCAGCCTCTGAAACGACGTCGGCGGCTGCGCCAGCGCCCGAGCCCAGCAAGCTTCCCATGCGAAAGATCCCAGGAGATTACGGTCTCCCTTTCATAGGACCCATCAAAGACCGCCTTGACTTCTTCTACAACCAAGGGCGCGACAAGTTCTTCCAATCCCGCGCCCAAAAATACAACTCCACCGTGTTCCGCGCCAACATGCCCCCCGGCCCCTTCATCGCCTCCAATCCAAACGTCATCGTTTTGCTCGACGCCAAAAGCTTCCCTGTCCTTTTCGACGTCAGCAAAGTCGAAAAGCGTGACGTCTTCACCGGCACCTTCATGCCCTCCACCCAACTCACCGGCGGTTACCGAATCCTCTCCTACCTGGACCCCTCCGAACCCAGACACGAACAACTCAAGCGCCTCTTGTTCTTCCTCCTCAAATCCCGAAGCAGCCACGTCATCCCCGAGTTTCATTCAAGCTACACAACCCTCTTTGAAACCCTGGAGAATGAGCTTGCTAAGGAAGGCAAGGCTAGCTTCCAAACCGCCAACGACCAAGCTGCGTTTAACTTCCTCGCTCGCGCGCTTTATGGCACCAACCCCTCCGACACAAACCTCGGACGCGACGGCCCAAGCATAATCCAAACATGGCTTTTGTTCCAGCTCGGCCCAATTATGACCTTGGGCCTTCCAAAATTCCTGGAAGATCCCACTCTTCACACCTTCCGCATCCCTCCTTTTCTGATAAAAAAAGATTACAAGAGACTCTACGATTTCTTCTACGAGTCCTCCGGGTTCGCGCTTGACGAAGCGGTGCGTTTAGGAGTTCCCAGAGAAGAAGCGTGCCACAACCTTTTATTCGCCACGTGCTTTAATTCCTTCGGGGGAATGAAGATATTCTTCCCCACTATTCTGAAATGGGTTGGGCGTGCGGGGGTGAAACTTCACGCTAGGTTGGCGGAGGAAGTGAGGGCCGCCGTTAAGTCAAACGGCGGGAAGGTGACGATGGCGTCGATGGAGGAAATGCCGTTGATGAAGTCGGTGGTTTACGAGGCGTTTCGGATAGAGCCGCCAGTGCCGCTGCAGTACGGGAGGGCGAAGAAGGAGTTGGTGATTGAGAGCCACGAGAATGCGTTCGTGGTGAAGGAAGGGGAGATGCTGTTCGGGTTTCAGCCGTTTGCGACAAAGGATCCGAAGATATTTGAGAATGCGGAGGAATTTGTGGCGGATCGGTTTGTGGGGGAGGGAGAGAAGTTGCTCAAACACGTGCTTTGGTCCAATGGGCCTGAGACCGAGGGACCCACCCTTGGGAACAAGCAATGTGCAGGGAAGGATTTTGTGGTGTTGTTCTCTCGGCTTCTGGTGGTGGAGTTCTTTCTTCATTATGATTCCTTTGATGTCCAAGTGGGGAATTCATCTTTGGGTTCTTCCCTTACCTTCACCTCCCTCAAGAAAGCAAGCTATTAG
Predicted protein sequences of Glyma.04g035000
>Glyma.04g035000.1.p sequence-type=predicted peptide transcript=Glyma.04g035000.1 locus=Glyma.04g035000 ID=Glyma.04g035000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTSITSASLPLLQLQSSLKRKPCNLKSSTTMRRFTTKASASETTSAAAPAPEPSKLPMRKIPGDYGLPFIGPIKDRLDFFYNQGRDKFFQSRAQKYNSTVFRANMPPGPFIASNPNVIVLLDAKSFPVLFDVSKVEKRDVFTGTFMPSTQLTGGYRILSYLDPSEPRHEQLKRLLFFLLKSRSSHVIPEFHSSYTTLFETLENELAKEGKASFQTANDQAAFNFLARALYGTNPSDTNLGRDGPSIIQTWLLFQLGPIMTLGLPKFLEDPTLHTFRIPPFLIKKDYKRLYDFFYESSGFALDEAVRLGVPREEACHNLLFATCFNSFGGMKIFFPTILKWVGRAGVKLHARLAEEVRAAVKSNGGKVTMASMEEMPLMKSVVYEAFRIEPPVPLQYGRAKKELVIESHENAFVVKEGEMLFGFQPFATKDPKIFENAEEFVADRFVGEGEKLLKHVLWSNGPETEGPTLGNKQCAGKDFVVLFSRLLVVEFFLHYDSFDVQVGNSSLGSSLTFTSLKKASY*






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