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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G31050.1 | AT | Biotin/lipoate A/B protein ligase family | JGI | N/A | IEA |
| GO:0006464 | GO-bp | cellular protein modification process | EnsemblGenomes | N/A | IEA |
| GO:0006464 | GO-bp | cellular protein modification process | JGI | N/A | IEA |
| GO:0009107 | GO-bp | lipoate biosynthetic process | EnsemblGenomes | N/A | IEA |
| GO:0009249 | GO-bp | protein lipoylation | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | JGI | N/A | IEA |
| GO:0033819 | GO-mf | lipoyl(octanoyl) transferase activity | EnsemblGenomes | N/A | IEA |
| KOG0325 | KOG | Lipoyltransferase | JGI | N/A | IEA |
| PTHR10993 | Panther | OCTANOYLTRANSFERASE | JGI | N/A | IEA |
| PTHR10993:SF0 | Panther | JGI | N/A | IEA | |
| PF03099 | PFAM | Biotin/lipoate A/B protein ligase family | JGI | N/A | IEA |
| PWY0-501 | SoyCyc9 | lipoate biosynthesis and incorporation I | Plant Metabolic Network | ISS | |
| GN7V-63857 | SoyCyc9-rxn | lipoyl(octanoyl) transferase | Plant Metabolic Network | ISS |
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| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g03720 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g034800.1 sequence-type=CDS polypeptide=Glyma.04g034800.1.p locus=Glyma.04g034800 ID=Glyma.04g034800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATTTTGTTGGGTTCATATTCTTTGACTTCAATTCCCTCATCTCCTATATCTCTCCGCCCCCACTCCTCTGTTGCCCATGGAAGAATGGTGCAGTGTTCGCGCAGATGCGAGCTTTTCGATCTGCATCAGGAACTGATCCCTTATGACGTGGCATGGTCTTGGCAAAAAGACATCGTCAGGGAAAAGAAATCACAGATTGAGAACGAAGGAGATTGCAGCGACACACTTATTATTCTGCAACACCCTTCTGTTTACACATTGGGTACCGCTAGTACACACCACAACCTCAACTTTGACATCGAAAATCCACCCTTTCCTATTTATCGCACTGAACGCGGCGGAGAAGTTACGTTCCACGGCCCTGGCCAGCTAATTATGTACCCTATTATCAACCTCCGAAGACACAAGATGGATCTTCATTGGTACCTCCGGACCCTTGAGGAGGTCGTTATTCGTGCTCTTTCTTCAACATTTTCAATTCAGGCTTCTCGGGTAGAAGGTTTAACTGGTGTTTGGGTTGGAAACCAGAAACTGGCAGCTTTAGGTATACGAGTGGCTCATTGGATAACCTATCATGGCTTAGCGCTGAATGTCACAACGGATTTGAGCCCCTTTAAATGGGTCATCCCATGCGGAATACGTGACCGTCAAGTGGGGAGTATAAAGGGCTTGCTTAAAGAAGCTCAATCATGTATTGCTCATGGAACATCTGTTTTGCACGATTTGGATGATACCAGTCTTATTCATATTACTTACAGGTCCTTGATTGAAGAGTTCTCACGAGCGTTTCAGCTTGAGTACCATTATAAAACTATTTCTGTACCTGTTTTGTGTAAAAGGAAACCTAGCTGTTTTTCAAAAGAAACGCAGCAAAGTTGA
>Glyma.04g034800.1.p sequence-type=predicted peptide transcript=Glyma.04g034800.1 locus=Glyma.04g034800 ID=Glyma.04g034800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MILLGSYSLTSIPSSPISLRPHSSVAHGRMVQCSRRCELFDLHQELIPYDVAWSWQKDIVREKKSQIENEGDCSDTLIILQHPSVYTLGTASTHHNLNFDIENPPFPIYRTERGGEVTFHGPGQLIMYPIINLRRHKMDLHWYLRTLEEVVIRALSSTFSIQASRVEGLTGVWVGNQKLAALGIRVAHWITYHGLALNVTTDLSPFKWVIPCGIRDRQVGSIKGLLKEAQSCIAHGTSVLHDLDDTSLIHITYRSLIEEFSRAFQLEYHYKTISVPVLCKRKPSCFSKETQQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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