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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75230.1 | AT | DNA glycosylase superfamily protein | JGI | N/A | IEA |
| GO:0006281 | GO-bp | DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0006284 | GO-bp | base-excision repair | EnsemblGenomes | N/A | IEA |
| GO:0006284 | GO-bp | base-excision repair | JGI | N/A | IEA |
| GO:0006285 | GO-bp | base-excision repair, AP site formation | EnsemblGenomes | N/A | IEA |
| GO:0006307 | GO-bp | DNA dealkylation involved in DNA repair | EnsemblGenomes | N/A | IEA |
| GO:0005737 | GO-cc | cytoplasm | EnsemblGenomes | N/A | IEA |
| GO:0032993 | GO-cc | protein-DNA complex | EnsemblGenomes | N/A | IEA |
| GO:0003824 | GO-mf | catalytic activity | EnsemblGenomes | N/A | IEA |
| GO:0008725 | GO-mf | DNA-3-methyladenine glycosylase activity | EnsemblGenomes | N/A | IEA |
| GO:0032131 | GO-mf | alkylated DNA binding | EnsemblGenomes | N/A | IEA |
| GO:0043916 | GO-mf | DNA-7-methylguanine glycosylase activity | EnsemblGenomes | N/A | IEA |
| KOG1918 | KOG | 3-methyladenine DNA glycosidase | JGI | N/A | IEA |
| PF00730 | PFAM | HhH-GPD superfamily base excision DNA repair protein | JGI | N/A | IEA |
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Glyma.04g031600 not represented in the dataset |
Glyma.04g031600 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g031700 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g03390 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g031600.1 sequence-type=CDS polypeptide=Glyma.04g031600.1.p locus=Glyma.04g031600 ID=Glyma.04g031600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGGGCGAACAGACGCTAGGTCAAGCACAATCCCTAATCGAACCTCAACCTCTCCCCGCCCCCTCCTCAACTGCCGTCCCCGACGGTGCCACGGTGGACTCCGAACTAAACAATGTCCCTCGGCCGACAACATCCCCAGCCACGAAAATCCCCCTCCGTCCCCGCAAGATCCGGAAGGTCTCTCCGGACCCCTCCACCTCCGAATCCCAAACCGAAACCCCCAAACCCGCCAAAACCGGGGGCCGCAACACCACCAAGGCTGCTCCGCCGCGAGCCCTTACGGTGGTCCCTCGTATAGTGGCGCGCTCACTCTCCTGCGACGGTGAAGTCGAGATCGCGCTCCGGTACCTCCGCAACGCGGACCCAGTCCTCTCCCCTCTCATCGACATTCACCAACCCCCAACCTTCGACAATTTCCACACTCCCTTCCTCGCCCTAACCCGCAGCATCTTGTACCAGCAACTCGCGTACAAAGCCGGCACCTCCATCTACACGCGCTTCATCGCGCTCTGCGGGGGCGAAAACGGTGTCGTTCCCGAAACCGTTCTCGCCCTAACACCCCAACAGCTTCGCCAGATTGGGGTTTCTGGGCGGAAGGCGAGTTACCTTCATGATTTGGCGAGGAAGTATCAGAACGGGATACTCTCCGATTCCGCCATTGTGAACATGGATGATAAGTCGCTCTTTACCATGCTCACCATGGTCAATGGCATTGGCTCTTGGTCTGTTCACATGTTCATGATTTTCTCACTCCACAGACCCGATGTTCTCCCCATCAATGACCTTGGCGTCAGGAAAGGAGTTCAGCTTCTCTACAACCTCGAGGACTTACCCCGGCCCTCGCAGATGGACCAGTTGTGTGACAAGTGGAGGCCTTACCGGTCCGTTGCTTCGTGGTACATGTGGAGATTTGTTGAAGCCAAGGGAACTCCTTCGAGTGCGGTGGCGGTAGCGACCGGTGCTGGCTTGCAGCAGCAGCAGCACCACCAGCACCATCACCAGCACCAACAACAGGAACAACAACAGCAGCAGCAGCAGCAACAGCAGCATCCTCCACAGCCACAGCTTCTGGATCCCATCAATAGCATGTTTAATCTCGGGGCCGCCTGTGCTTGGGGACAATGA
>Glyma.04g031600.1.p sequence-type=predicted peptide transcript=Glyma.04g031600.1 locus=Glyma.04g031600 ID=Glyma.04g031600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MGEQTLGQAQSLIEPQPLPAPSSTAVPDGATVDSELNNVPRPTTSPATKIPLRPRKIRKVSPDPSTSESQTETPKPAKTGGRNTTKAAPPRALTVVPRIVARSLSCDGEVEIALRYLRNADPVLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGENGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDLPRPSQMDQLCDKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGAGLQQQQHHQHHHQHQQQEQQQQQQQQQQHPPQPQLLDPINSMFNLGAACAWGQ*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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