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Report for Sequence Feature Glyma.04g031600

Feature Type:gene_model
Chromosome:Gm04
Start:2525754
stop:2530508
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g031600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75230.1AT DNA glycosylase superfamily protein JGI N/AIEA
GO:0006281GO-bp DNA repair EnsemblGenomesN/AIEA
GO:0006284GO-bp base-excision repair EnsemblGenomesN/AIEA
GO:0006284GO-bp base-excision repair JGI N/AIEA
GO:0006285GO-bp base-excision repair, AP site formation EnsemblGenomesN/AIEA
GO:0006307GO-bp DNA dealkylation involved in DNA repair EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0032993GO-cc protein-DNA complex EnsemblGenomesN/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0008725GO-mf DNA-3-methyladenine glycosylase activity EnsemblGenomesN/AIEA
GO:0032131GO-mf alkylated DNA binding EnsemblGenomesN/AIEA
GO:0043916GO-mf DNA-7-methylguanine glycosylase activity EnsemblGenomesN/AIEA
KOG1918 KOG 3-methyladenine DNA glycosidase JGI N/AIEA
PF00730PFAM HhH-GPD superfamily base excision DNA repair protein JGI N/AIEA

Expression Patterns of Glyma.04g031600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g031600
ParalogEvidenceComments
Glyma.06g031700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g031600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g03390 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g031600
>Glyma.04g031600.1 sequence-type=CDS polypeptide=Glyma.04g031600.1.p locus=Glyma.04g031600 ID=Glyma.04g031600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGGCGAACAGACGCTAGGTCAAGCACAATCCCTAATCGAACCTCAACCTCTCCCCGCCCCCTCCTCAACTGCCGTCCCCGACGGTGCCACGGTGGACTCCGAACTAAACAATGTCCCTCGGCCGACAACATCCCCAGCCACGAAAATCCCCCTCCGTCCCCGCAAGATCCGGAAGGTCTCTCCGGACCCCTCCACCTCCGAATCCCAAACCGAAACCCCCAAACCCGCCAAAACCGGGGGCCGCAACACCACCAAGGCTGCTCCGCCGCGAGCCCTTACGGTGGTCCCTCGTATAGTGGCGCGCTCACTCTCCTGCGACGGTGAAGTCGAGATCGCGCTCCGGTACCTCCGCAACGCGGACCCAGTCCTCTCCCCTCTCATCGACATTCACCAACCCCCAACCTTCGACAATTTCCACACTCCCTTCCTCGCCCTAACCCGCAGCATCTTGTACCAGCAACTCGCGTACAAAGCCGGCACCTCCATCTACACGCGCTTCATCGCGCTCTGCGGGGGCGAAAACGGTGTCGTTCCCGAAACCGTTCTCGCCCTAACACCCCAACAGCTTCGCCAGATTGGGGTTTCTGGGCGGAAGGCGAGTTACCTTCATGATTTGGCGAGGAAGTATCAGAACGGGATACTCTCCGATTCCGCCATTGTGAACATGGATGATAAGTCGCTCTTTACCATGCTCACCATGGTCAATGGCATTGGCTCTTGGTCTGTTCACATGTTCATGATTTTCTCACTCCACAGACCCGATGTTCTCCCCATCAATGACCTTGGCGTCAGGAAAGGAGTTCAGCTTCTCTACAACCTCGAGGACTTACCCCGGCCCTCGCAGATGGACCAGTTGTGTGACAAGTGGAGGCCTTACCGGTCCGTTGCTTCGTGGTACATGTGGAGATTTGTTGAAGCCAAGGGAACTCCTTCGAGTGCGGTGGCGGTAGCGACCGGTGCTGGCTTGCAGCAGCAGCAGCACCACCAGCACCATCACCAGCACCAACAACAGGAACAACAACAGCAGCAGCAGCAGCAACAGCAGCATCCTCCACAGCCACAGCTTCTGGATCCCATCAATAGCATGTTTAATCTCGGGGCCGCCTGTGCTTGGGGACAATGA
Predicted protein sequences of Glyma.04g031600
>Glyma.04g031600.1.p sequence-type=predicted peptide transcript=Glyma.04g031600.1 locus=Glyma.04g031600 ID=Glyma.04g031600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MGEQTLGQAQSLIEPQPLPAPSSTAVPDGATVDSELNNVPRPTTSPATKIPLRPRKIRKVSPDPSTSESQTETPKPAKTGGRNTTKAAPPRALTVVPRIVARSLSCDGEVEIALRYLRNADPVLSPLIDIHQPPTFDNFHTPFLALTRSILYQQLAYKAGTSIYTRFIALCGGENGVVPETVLALTPQQLRQIGVSGRKASYLHDLARKYQNGILSDSAIVNMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPINDLGVRKGVQLLYNLEDLPRPSQMDQLCDKWRPYRSVASWYMWRFVEAKGTPSSAVAVATGAGLQQQQHHQHHHQHQQQEQQQQQQQQQQHPPQPQLLDPINSMFNLGAACAWGQ*






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