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Report for Sequence Feature Glyma.04g030000

Feature Type:gene_model
Chromosome:Gm04
Start:2429647
stop:2437011
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g030000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G22100.1AT Inositol-pentakisphosphate 2-kinase family protein JGI N/AIEA
GO:0016310GO-bp phosphorylation EnsemblGenomesN/AIEA
GO:0032958GO-bp inositol phosphate biosynthetic process EnsemblGenomesN/AIEA
GO:0052746GO-bp inositol phosphorylation EnsemblGenomesN/AIEA
GO:0005634GO-cc nucleus EnsemblGenomesN/AIEA
GO:0000166GO-mf nucleotide binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding EnsemblGenomesN/AIEA
GO:0005524GO-mf ATP binding JGI N/AIEA
GO:0016301GO-mf kinase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
GO:0035299GO-mf inositol pentakisphosphate 2-kinase activity EnsemblGenomesN/AIEA
GO:0035299GO-mf inositol pentakisphosphate 2-kinase activity JGI N/AIEA
KOG4749 KOG Inositol polyphosphate kinase JGI N/AIEA
PTHR14456Panther INOSITOL POLYPHOSPHATE KINASE 1 JGI N/AIEA
PTHR14456:SF6Panther JGI N/AIEA
PF06090PFAM Inositol-pentakisphosphate 2-kinase JGI N/AIEA
PWY-4541SoyCyc9 lipid-dependent phytate biosynthesis I (via Ins(1,4,5)P3) Plant Metabolic Network ISS
PWY-4562SoyCyc9 lipid-dependent phytate biosynthesis II (via Ins(1,3,4)P3) Plant Metabolic Network ISS
PWY-4661SoyCyc9 1D-myo-inositol hexakisphosphate biosynthesis III (Spirodela polyrrhiza) Plant Metabolic Network ISS
PWY-4765SoyCyc9 superpathway of lipid-dependent phytate biosynthesis Plant Metabolic Network ISS
PWY-6369SoyCyc9 inositol pyrophosphates biosynthesis Plant Metabolic Network ISS
PWY-6554SoyCyc9 1D-myo-inositol hexakisphosphate biosynthesis V (from Ins(1,3,4)P3) Plant Metabolic Network ISS
GN7V-43778SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Expression Patterns of Glyma.04g030000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g030000
ParalogEvidenceComments
Glyma.06g030100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g030000 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g03240 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g030000
>Glyma.04g030000.1 sequence-type=CDS polypeptide=Glyma.04g030000.1.p locus=Glyma.04g030000 ID=Glyma.04g030000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGGTAATTTTAAGGGAGAAGGACGCAGGTGAGTGGGTTTACCGAGGCGAAGGAGCTGCCAATCTTGTTCTCGCATACACCGGATCATCTCCTACGTTTATTGGGAAAGTGATGCGCATTCGTAAGTGTCCAAGGAATGGCGCAGAGGGTATGTGTATGAGGAGCCCCTCTGCTTTGACTGCGCACGAGCGCCTCCTCTGGAAAGACGTTGATGAACTCATTTCATCTTTGGACAATGAAATTGCATGCCAACTATTTTCCCACCACGTTATGAAGCCATTGCTTGGTCCCAAATATATTGATGCTGGGATGCTTGTTGGGGTGTCAAGGGAATTTCTCGAATTGGTTGAAAAGAATGTAATTCGTCAACGTCCTGCTTGGAGAGTTGATAATGCTCAGGTCGACATGCATCGTGATTCTGTGCTTCTCATGTCTGATCACTCACTCTTCACTCATGGTAATCTAGTATCTATCCCCTGCATATCTGTTGAGATAAAGCCCAAATGTGGATTTATTCCTCTTTCAAGATTCATATCTGAAGGAACTGCTATCAAAAGGAGGATAACTCGCTTTCAAATGCACCAAGCTCTGAAATTGCATCAAGGAGAGATATCACTGCTAAGTGAATACAATCCTCTTGATCTGTTCTCTGGATCAAAGGAAAGAATTTATAAAGCTATCAAGGATCTCTTCACTACACCTCAAAACAATTTTCGTGTATTTATGAATGGCTCTCTCATATTTGGTGGTCTGGGAGGTGGTGCAGAAGATACAAACTTTGGTATTGCTAAAGCATTTGAAGATGCACTTAAGTCTGTCATTCAAGCTGATAATGGTCTGTGTACAGAGAACTTGCTTACTATTGTTGCTGAGGCTGTGCAAAAATCGGGAGTCCTTGATCGACTCCTGGATGTTCAGAAGCTTGATAATGTTGACATAGAAGGAGCCATCCATGCTTATTATGACATTACTCATCAACAGTGCATGATATGTAGAGAATTGAGTGAAGAGCAACTGAAAAGATATACCTCTTTGCATTCTGCTACATTGGATGAAAGCTTGAGAATTGTAAAGGACTACTTAATAGCAGCAACTGCAAAAGACTGCAGTTTTATGATATGTTTTAGACCAAGGAAAGCGGGGGATTCTGGATCTGGATCTATATACAGTAACATATATCTTGAGTCAACTAAGCAAACCTTTGACTTCAAGGTGTATTTCATTGACTTGGATTTGAAGCGAATGAGTAAAATGGAAGAATATTATGAATTAGATAAGAAGATAGTGAGCTGCTACAAAGAAATGATCAAAATGGACCAGGGAAGAAACCCACAAACTTGCAATCCTCTTAAACTGCATACTGAGATTTAG
Predicted protein sequences of Glyma.04g030000
>Glyma.04g030000.1.p sequence-type=predicted peptide transcript=Glyma.04g030000.1 locus=Glyma.04g030000 ID=Glyma.04g030000.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEVILREKDAGEWVYRGEGAANLVLAYTGSSPTFIGKVMRIRKCPRNGAEGMCMRSPSALTAHERLLWKDVDELISSLDNEIACQLFSHHVMKPLLGPKYIDAGMLVGVSREFLELVEKNVIRQRPAWRVDNAQVDMHRDSVLLMSDHSLFTHGNLVSIPCISVEIKPKCGFIPLSRFISEGTAIKRRITRFQMHQALKLHQGEISLLSEYNPLDLFSGSKERIYKAIKDLFTTPQNNFRVFMNGSLIFGGLGGGAEDTNFGIAKAFEDALKSVIQADNGLCTENLLTIVAEAVQKSGVLDRLLDVQKLDNVDIEGAIHAYYDITHQQCMICRELSEEQLKRYTSLHSATLDESLRIVKDYLIAATAKDCSFMICFRPRKAGDSGSGSIYSNIYLESTKQTFDFKVYFIDLDLKRMSKMEEYYELDKKIVSCYKEMIKMDQGRNPQTCNPLKLHTEI*






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