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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A previous version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24550.2 | AT | Clathrin adaptor complexes medium subunit family protein | JGI | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | EnsemblGenomes | N/A | IEA |
| GO:0006886 | GO-bp | intracellular protein transport | JGI | N/A | IEA |
| GO:0015031 | GO-bp | protein transport | EnsemblGenomes | N/A | IEA |
| GO:0016192 | GO-bp | vesicle-mediated transport | EnsemblGenomes | N/A | IEA |
| GO:0016192 | GO-bp | vesicle-mediated transport | JGI | N/A | IEA |
| GO:0016020 | GO-cc | membrane | EnsemblGenomes | N/A | IEA |
| GO:0030131 | GO-cc | clathrin adaptor complex | EnsemblGenomes | N/A | IEA |
| GO:0030131 | GO-cc | clathrin adaptor complex | JGI | N/A | IEA |
| GO:0005515 | GO-mf | protein binding | JGI | N/A | IEA |
| KOG0937 | KOG | Adaptor complexes medium subunit family | JGI | N/A | IEA |
| PTHR11998 | Panther | CLATHRIN COAT ASSEMBLY PROTEIN | JGI | N/A | IEA |
| PTHR11998:SF13 | Panther | AP-4 COMPLEX SUBUNIT MU-1 | JGI | N/A | IEA |
| PF00928 | PFAM | Adaptor complexes medium subunit family | JGI | N/A | IEA |
| PF01217 | PFAM | Clathrin adaptor complex small chain | JGI | N/A | IEA |
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Glyma.04g029800 not represented in the dataset |
Glyma.04g029800 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.
Gene information in GlycineMine developed by LIS.
Gene families from PhyloGenes.
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma.06g029800 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma04g03220 | Wm82.a1.v1.1 | IGC | As supplied by JGI |
>Glyma.04g029800.1 sequence-type=CDS polypeptide=Glyma.04g029800.1.p locus=Glyma.04g029800 ID=Glyma.04g029800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 ATGATATTGCAGTTCTTCGTGCTTTCACAGAGAGGCGATAACATCGTCTACCGCGACTATCGTGGTGAAGCTCAAAAAGGAAGCGCTGAGACATTTTTCCGAAAAGTAAAGTTCTGGAAAGAAGATGCTGAGGGAGATGCTCCACCTGTTTTTAATATAGACGGTGTGAACTACTTCCACGTAAAGGTTGCTGGATTGCTATTTGTTGCTACTACTAGAGTCAATGTCTCCCCTTCTCTTGTTTTGGAACTTTTACAAAGAATTGCACGTGTCATCAAAGATTACCTTGGTGTTCTCAATGAAGATTCCTTTAGAAAGAACTTCGTGCTCGTTTATGAATTACTGGATGAAGTCATTGATTTTGGTTATGTGCAAACAACATCCACTGAGGATTTGAAGTCATATGTTTTCAATGAGCCAATAGTGATTGATGCTGCACGGATGCCTCCACTTGGCCCTGCTTCCATTTTTATGCAAGGGACCAAACGAATGCCAGGTACAGCTATTACAAAGTCTGTGGTTGCTAATGAACCCGGTGGAAGGAAGAGGGATGAGATCTTTGTTGATGTAATTGAGAAAATAAGTGTTACATTCAACTCTAGTGGATTTATACTTACTAGTGAGATAGATGGAACCATTCAAATGAAGAGTTATCTTACTGGTAACCCAGAGATTCGACTTGCTCTCAACGAGGACCTGAGTATAGGAACAAGTGATTATAGAGGTTCAGGTGCTGTCATTTTAGATGATTGTAACTTCCATGAGTCTGTACACCTTGATAGTTTTGATGTTGATAGAACTTTGTCATTGGTACCACCAGAAGGTGAATTTCCAGTCATGAATTATCGTATGACTCAACCATTTAAGCCACCCTTTCGTATTAATGCATTAATTGAAGAAACAGGATCCCTAAAGGCTGAAGTGACCATTAAAGTGCGAGCTGAATTCAACTCAAGTATCAATGCTAATACTGTTCTTGTGCAGATGCCTCTGCCATCATTTACATCTCGTGTTACTTTTGAGTTAGAACCTGGAGCAGTTGGACACACCACTGATTTTAAGGAAGCAAATAAAAGACTGGAATGGGGTCTGAAAAAGGTTGTTGGTGGATCTGAACATACTTTACGAGCAAAGCTGACATTTTCACAGGAGTTACATGGAAATATCATGAAAGAAGCAGGGCCTGTCAGCATGACTTTCACCGTACCTATGTACAATGCTTCAAGGCTTCAGGTGAAGTATTTGCAAATAGCAAAGAAATCAAAAGCACATAATCCTTATCGCTGGGTTAGATATGTAACCCAAGCAAACTCATACGTAGCACGGTTATAA
>Glyma.04g029800.1.p sequence-type=predicted peptide transcript=Glyma.04g029800.1 locus=Glyma.04g029800 ID=Glyma.04g029800.1.Wm82.a2.v1 annot-version=Wm82.a2.v1 MILQFFVLSQRGDNIVYRDYRGEAQKGSAETFFRKVKFWKEDAEGDAPPVFNIDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLNEDSFRKNFVLVYELLDEVIDFGYVQTTSTEDLKSYVFNEPIVIDAARMPPLGPASIFMQGTKRMPGTAITKSVVANEPGGRKRDEIFVDVIEKISVTFNSSGFILTSEIDGTIQMKSYLTGNPEIRLALNEDLSIGTSDYRGSGAVILDDCNFHESVHLDSFDVDRTLSLVPPEGEFPVMNYRMTQPFKPPFRINALIEETGSLKAEVTIKVRAEFNSSINANTVLVQMPLPSFTSRVTFELEPGAVGHTTDFKEANKRLEWGLKKVVGGSEHTLRAKLTFSQELHGNIMKEAGPVSMTFTVPMYNASRLQVKYLQIAKKSKAHNPYRWVRYVTQANSYVARL*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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