Glyma.04g027700

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean/Absolute/Glyma.04g027700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1018

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1019

Warning: get_headers(): php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: get_headers(https://bar.utoronto.ca/api/efp_image/efp_soybean/soybean_severin/Absolute/Glyma.04g027700): Failed to open stream: php_network_getaddresses: getaddrinfo for bar.utoronto.ca failed: Temporary failure in name resolution in /var/www/html/include/SeqFeatClass.php on line 1020

Warning: Trying to access array offset on false in /var/www/html/include/SeqFeatClass.php on line 1021

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1025

Deprecated: preg_match(): Passing null to parameter #2 ($subject) of type string is deprecated in /var/www/html/include/SeqFeatClass.php on line 1031

Report for Sequence Feature Glyma.04g027700

Feature Type:	gene_model
Chromosome:	Gm04
Start:	2259167
stop:	2266416
Source:	JGI
Version:	Wm82.a2.v1
High confidence:	yes

A previous version of this gene model can be found here:

Annotations for Glyma.04g027700

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75510.1	AT	Transcription initiation factor IIF, beta subunit	JGI	N/A	IEA
GO:0006366	GO-bp	transcription by RNA polymerase II	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0006367	GO-bp	transcription initiation from RNA polymerase II promoter	JGI	N/A	IEA
GO:0032968	GO-bp	positive regulation of transcription elongation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0060261	GO-bp	positive regulation of transcription initiation from RNA polymerase II promoter	EnsemblGenomes	N/A	IEA
GO:0005674	GO-cc	transcription factor TFIIF complex	EnsemblGenomes	N/A	IEA
GO:0005674	GO-cc	transcription factor TFIIF complex	JGI	N/A	IEA
GO:0000991	GO-mf	transcription factor activity, core RNA polymerase II binding	EnsemblGenomes	N/A	IEA
GO:0005524	GO-mf	ATP binding	JGI	N/A	IEA
KOG2905	KOG	Transcription initiation factor IIF, small subunit (RAP30)	JGI	N/A	IEA
PTHR10445	Panther	GENERAL TRANSCRIPTION FACTOR IIF SUBUNIT 2	JGI	N/A	IEA
PF02270	PFAM	Transcription initiation factor IIF, beta subunit	JGI	N/A	IEA

Expression Patterns of Glyma.04g027700

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g027700 not represented in the dataset	Glyma.04g027700 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.

Gene information in GlycineMine developed by LIS.

Related Plant Genes

Gene families from PhyloGenes.

Paralogs of Glyma.04g027700

Paralog	Evidence	Comments
Glyma.06g027900	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g027700 Gene Call Version Wm82.a2.v1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma04g03030	Wm82.a1.v1.1	IGC	As supplied by JGI

Transcripts of Glyma.04g027700

Limit To All Plant Sequences

>Glyma.04g027700.2 sequence-type=transcript locus=Glyma.04g027700 ID=Glyma.04g027700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
GTAAATCACAAAATAAGAGCTAGTTTATTTTTCCTGCGGTGTGTTTGACCAACAAACGACTGCGAAAGTGTGCTTGAAACCACAAATTCTTGGAGTTGATTTGATTCGGAAGTTCATACAATCAGAATTCATTTGTCTCTTAAATCCTTTAGATACGAGTTCCATGTATCTATGTTACCAAGTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTGCCAATCAAGGAACCTACGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACGAGTGCTGAATAAGTGCGCTATGTTCTTTTACATTATACTCTAACTCCACTGAGACACAGACCCTCCCAAAATATTGAAATTCAGTCTCTTTCTCTTTGCTGAGAAGAGTCAACGTGTTTAGGTAAATAGGTTGATGGAACAAAGAATCGTTGGACAACAAACAAGCAAACTGTGTATGTGAGCCGTGAAGAAAAATTATCAAAGATGCAGTTGTATACGTTCAAAAAGGAATTTTAGCAACCGAAAAATTAATGATATGTTGCCTGGTTACGTGTAGAATATCTCTGCCCCCTTGTACATAGAGTTGTTCTGTTCTAAAAGCCTACCTAGTAACATGATGCTCTTCCCCTAGTTTATATGATGATTCTTTCGAGCCAATTGAATATATCAGCACCCAGTTAATTATTTTTGGCAAAAAAAAAGATACATTCTTTTTCTGATCCAACAACACTTAACTTAATTATGCTGCTTAGTTGTGTTCAGTCCTGCATTGGAGGAAAAGAGGTGAGGGATTGAGGGTCAAGTTTACT

>Glyma.04g027700.3 sequence-type=transcript locus=Glyma.04g027700 ID=Glyma.04g027700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
GGGGGCGGTGTCGGTTTTCAGACACGAGTGGCTTTTGTTACTGCGCTGCGTGCAGAAACAGAGAAGGAGAGAAGAATGGACGAGGAGAATGGTTACAGTGGGAGTAGCAGCTCAAACTTGGAGACTACAAAAGCAGAGAGATCTGTGTGGCTGATGAAGTGCCCTTTGGTGGTGGCTAAGTCATGGCAGGCTCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCAGTATGCTTTTCTGCTCTGCCTTTTTTTTTTGGTGTTCTTTTTCACCTGAGTCTAGAGAAATGCTAGCAACACACT

Coding sequences of Glyma.04g027700

Limit To All Plant Sequences

>Glyma.04g027700.1 sequence-type=CDS polypeptide=Glyma.04g027700.1.p locus=Glyma.04g027700 ID=Glyma.04g027700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGAGGAGAATGGTTACAGTGGGAGTAGCAGCTCAAACTTGGAGACTACAAAAGCAGAGAGATCTGTGTGGCTGATGAAGTGCCCTTTGGTGGTGGCTAAGTCATGGCAGGCTCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTGCCAATCAAGGAACCTACGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACGAGTGCTGAATAA

>Glyma.04g027700.2 sequence-type=CDS polypeptide=Glyma.04g027700.2.p locus=Glyma.04g027700 ID=Glyma.04g027700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCACAATTCTTGAAAGAGATTCTGAACGAACTTTGTGTTTACAATAAAAGAGGTGCCAATCAAGGAACCTACGAGCTGAAGCCTGAGTACAAGAAATCTGTTGAAGATACGAGTGCTGAATAA

>Glyma.04g027700.3 sequence-type=CDS polypeptide=Glyma.04g027700.3.p locus=Glyma.04g027700 ID=Glyma.04g027700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACGAGGAGAATGGTTACAGTGGGAGTAGCAGCTCAAACTTGGAGACTACAAAAGCAGAGAGATCTGTGTGGCTGATGAAGTGCCCTTTGGTGGTGGCTAAGTCATGGCAGGCTCATCCTCCTTCTCAACCTCTCGCCAAGGTTGTGCTCTCCCTTGATCCTCTCCACCCTGAAGAAGACGATCCCTCTGCAGTCCAGTTTACAATGGAGATGGCTGGCTCCGAAGCTGTGAATATGCCAAAAACTTATTCATTGAATATGTTTAAAGACTTTGTTCCTATGTGTGTCTTCTCCGAGACTAGCCAAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCATGGTGAAAACATTGAAGAGTATGGTAAATTGTGTCGTGAGAGGACAAACAAATCTATGATTAAAAATCGACAAATACAGGTTATTGATAATGACCGGGGAGTTCTAATGAGGCCAATGCCTGGAATGATTGGTCTAGTTTCATCCAATTCTAAGGACAAGAAGAAGACACAGCCGGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGGGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAATTGGGCCTTGAAACAGCTTGTCCAAGAGACTGATCAACCTGCAGTATGCTTTTCTGCTCTGCCTTTTTTTTTTGGTGTTCTTTTTCACCTGAGTCTAGAGAAATGCTAG

Predicted protein sequences of Glyma.04g027700

Limit To All Plant Sequences

>Glyma.04g027700.1.p sequence-type=predicted peptide transcript=Glyma.04g027700.1 locus=Glyma.04g027700 ID=Glyma.04g027700.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEENGYSGSSSSNLETTKAERSVWLMKCPLVVAKSWQAHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE*

>Glyma.04g027700.2.p sequence-type=predicted peptide transcript=Glyma.04g027700.2 locus=Glyma.04g027700 ID=Glyma.04g027700.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MEMAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE*

>Glyma.04g027700.3.p sequence-type=predicted peptide transcript=Glyma.04g027700.3 locus=Glyma.04g027700 ID=Glyma.04g027700.3.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDEENGYSGSSSSNLETTKAERSVWLMKCPLVVAKSWQAHPPSQPLAKVVLSLDPLHPEEDDPSAVQFTMEMAGSEAVNMPKTYSLNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGMIGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAVCFSALPFFFGVLFHLSLEKC*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain