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Report for Sequence Feature Glyma.04g026500

Feature Type:gene_model
Chromosome:Gm04
Start:2154939
stop:2159326
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g026500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G24160.1AT alpha/beta-Hydrolases superfamily protein JGI N/AIEA
GO:0015996GO-bp chlorophyll catabolic process JGI N/AIEA
GO:0003824GO-mf catalytic activity EnsemblGenomesN/AIEA
GO:0047746GO-mf chlorophyllase activity JGI N/AIEA
KOG4409 KOG Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) JGI N/AIEA
PTHR10992Panther ALPHA/BETA HYDROLASE FOLD-CONTAINING PROTEIN JGI N/AIEA
PTHR10992:SF56Panther ALPHA-HYDROXYNITRILE LYASE-RELATED JGI N/AIEA
PF00561PFAM alpha/beta hydrolase fold JGI N/AIEA
PHOSLIPSYN2-PWYSoyCyc9 superpathway of phospholipid biosynthesis II (plants) Plant Metabolic Network ISS
PWY-5667SoyCyc9 CDP-diacylglycerol biosynthesis I Plant Metabolic Network ISS
PWY-7417SoyCyc9 phospholipid remodeling (phosphatidate, yeast) Plant Metabolic Network ISS
PWY4FS-8SoyCyc9 phosphatidylglycerol biosynthesis II (non-plastidic) Plant Metabolic Network ISS
TRIGLSYN-PWYSoyCyc9 diacylglycerol and triacylglycerol biosynthesis Plant Metabolic Network ISS
GN7V-67866SoyCyc9-rxn acyl-CoA:1-acyl-sn-glycerol-3-phosphate 2-O-acyltransferase Plant Metabolic Network ISS

Expression Patterns of Glyma.04g026500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g026500
ParalogEvidenceComments
Glyma.06g026500 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g026500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g02900 Wm82.a1.v1.1IGC As supplied by JGI


Transcripts of Glyma.04g026500
>Glyma.04g026500.2 sequence-type=transcript locus=Glyma.04g026500 ID=Glyma.04g026500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
TAAGAATCTAGAGGTGGCGGAAAGAGAAAGAGTCATGGATGCGCGTCACTGCTCGCGTTCATTATAATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAGGTTAGGTCTTAATTTTGTGCTATTCCTGTCTATATGTATTTTAATATTTTTTTTTACTAATTAAATTTCATAATTGAATGAAATCATATGTATATTGTTTCAGTAAAGTGGAATTTACTGAAAATATTTGTAATAGCAACTTCAACAAAAATCGATTTGTAGGAGAAATTTCTTCCCTGGAAATTGTTCTATTTTAAATCTTGTTGCTCATAAGATATTATGACTTCATTCAACTAATAATTCATGTCGTTTAGGAAAAGTAGTTAGTTATATTAAATTTGTC
Coding sequences of Glyma.04g026500
>Glyma.04g026500.1 sequence-type=CDS polypeptide=Glyma.04g026500.1.p locus=Glyma.04g026500 ID=Glyma.04g026500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAG

>Glyma.04g026500.2 sequence-type=CDS polypeptide=Glyma.04g026500.2.p locus=Glyma.04g026500 ID=Glyma.04g026500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGCGGAAGAGATAACCAAGAACGACGTCGGAGTAACCTCCAAAACCACCAGAAGCAGCTCCAGGTTCTGGCCTCGTTGGATTCCCACTTCCACCGATCACATCATCGCTGCCGAGAAGCGCCTTCTTTCCGTCGTCAAGACTGGTTATGTTCAAGAGCATGTTAACATTGGCTCTGGTCCTCCTGGCTCCAAAGTGAGGTGGTTCCGTTCATCCAGCAACGAGCCGCGGTTTATTAACACCGTTACATTTGACAGTAAACCCCATTCTCCAACGCTTGTCATGATTCATGGTTATGCTGCTTCACAGGGGTTCTTTTTTCGCAATTTTGACGCGCTTGCGTCTCGATTTAGAGTCATTGCTGTTGATCAACTTGGATGGGGTGGATCGAGCAGACCTGATTTCACATGCAAAAGCACTGAAGAAACTGAGGCATGGTTTATTGATTCTTTTGAGGAATGGAGAAAAGCCAAAAACTTGAGCAATTTTATACTGCTCGGACATTCTTTTGGTGGTTATGTTGCTGCCAAATATGCGCTCAAGCACCCTGAGCATGTACAACACTTGATTCTGGTTGGATCTGCTGGATTTTCATCTGAATCAGATGCAAAGTCTGAGTGGATAACAAGGTTTCGAGCAACATGGAAGGGGGCAGTTTTGAACCATCTTTGGGAATCAAATTTCACACCTCAGAAACTTGTCAGGGGTTTAGGTCCTTGGGGTCCCAACATAGTCCGCAAGTATACAAGTGCTAGGTTTGGTACACATTCAACTGGGGAAATACTGACTGAAGAGGAATCAACATTGCTGACAGACTATGTTTACCACACATTGGCGGCCAAAGCTAGTGGAGAGCTGTGCTTAAAATATATTTTTTCATTTGGAGCATTTGCTAGGATGCCCCTTCTTCTCAGTGCCTCAGAGTGGAAGGTGCCCACCACTTTCATGTATGGTTTCCAAGACTGGATGAATTATCAAGGTGCCCAAGAAGCTCGCAAGCATATGAAGGTTCCATGCGAAATCATCAGGATTCCTCAGGGTGGGCACTTTGCGTTCATTGACAACCCAACTGCCTTCCATTCAGCTGTTTTTTATGCTTGTCGAAGGTTTCTTACACCTGATCCAGACAATGAATCTCTTCCTAAAGGGCTAACCTCTGCATAG
Predicted protein sequences of Glyma.04g026500
>Glyma.04g026500.1.p sequence-type=predicted peptide transcript=Glyma.04g026500.1 locus=Glyma.04g026500 ID=Glyma.04g026500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEITKNDVGVTSKTTRSSSRFWPRWIPTSTDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSSSNEPRFINTVTFDSKPHSPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSEWITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVPTTFMYGFQDWMNYQGAQEARKHMKVPCEIIRIPQGGHFAFIDNPTAFHSAVFYACRRFLTPDPDNESLPKGLTSA*

>Glyma.04g026500.2.p sequence-type=predicted peptide transcript=Glyma.04g026500.2 locus=Glyma.04g026500 ID=Glyma.04g026500.2.Wm82.a2.v1 annot-version=Wm82.a2.v1
MAEEITKNDVGVTSKTTRSSSRFWPRWIPTSTDHIIAAEKRLLSVVKTGYVQEHVNIGSGPPGSKVRWFRSSSNEPRFINTVTFDSKPHSPTLVMIHGYAASQGFFFRNFDALASRFRVIAVDQLGWGGSSRPDFTCKSTEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGSAGFSSESDAKSEWITRFRATWKGAVLNHLWESNFTPQKLVRGLGPWGPNIVRKYTSARFGTHSTGEILTEEESTLLTDYVYHTLAAKASGELCLKYIFSFGAFARMPLLLSASEWKVPTTFMYGFQDWMNYQGAQEARKHMKVPCEIIRIPQGGHFAFIDNPTAFHSAVFYACRRFLTPDPDNESLPKGLTSA*






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