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Report for Sequence Feature Glyma.04g021500

Feature Type:gene_model
Chromosome:Gm04
Start:1691664
stop:1695088
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g021500
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20200.1AT PAM domain (PCI/PINT associated module) protein JGI N/AIEA
GO:0006511GO-bp ubiquitin-dependent protein catabolic process EnsemblGenomesN/AIEA
GO:0042176GO-bp regulation of protein catabolic process EnsemblGenomesN/AIEA
GO:0042176GO-bp regulation of protein catabolic process JGI N/AIEA
GO:0050790GO-bp regulation of catalytic activity EnsemblGenomesN/AIEA
GO:0000502GO-cc proteasome complex EnsemblGenomesN/AIEA
GO:0000502GO-cc proteasome complex JGI N/AIEA
GO:0008541GO-cc proteasome regulatory particle, lid subcomplex EnsemblGenomesN/AIEA
GO:0005515GO-mf protein binding JGI N/AIEA
GO:0030234GO-mf enzyme regulator activity EnsemblGenomesN/AIEA
GO:0030234GO-mf enzyme regulator activity JGI N/AIEA
KOG2581 KOG 26S proteasome regulatory complex, subunit RPN3/PSMD3 JGI N/AIEA
PTHR10758Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 JGI N/AIEA
PTHR10758:SF2Panther 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3 JGI N/AIEA
PF01399PFAM PCI domain JGI N/AIEA
PF08375PFAM Proteasome regulatory subunit C-terminal JGI N/AIEA

Expression Patterns of Glyma.04g021500
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g021500
ParalogEvidenceComments
Glyma.06g021600 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g021500 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g02370 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g021500
>Glyma.04g021500.1 sequence-type=CDS polypeptide=Glyma.04g021500.1.p locus=Glyma.04g021500 ID=Glyma.04g021500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGACTCAAGATCTCGAGATGAGGGATCGCTCAACGCCTTCCAACTCTGTTTCTTTGCCTGCTCCATCTACTTTGCAGCATTTGAAGGAGATAGCGTCTCTTATCGAGACCGGTTCGTACTCGAAGGAAGTTCGTAGAATTGCTCGCGCTGTTCGCCTTACAATTGCGTTGAGGCGGAAATTGACAGCATCCGCTATCTCTTCTTTTCTCGACCTTGTTCTCACTCCAGGCTCTGAAGTTCACGCCAAATTGTCTGCGTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGACGCCGCAACATCTGCTATTCAAACCCCAGCCAAACACTTGTTGCCTGAGCTAGAAATCTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCGGCTAGCATTGTTTGGCTTAAGAACACAAACAGGAGAACTGTTGATGTTATTGCATCCAGACTGTATTTTTACTATTCGTATAGCTATGAGCTTACAGGAGATCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCACCGATTTGCGACTCTCCGCCATGATGAGCTGGGACAGGAAACACTTCTTAATTTGTTACTTCGAAACTACCTTCACTACAACCTATATGATCAGGCTGAGAAGTTGAGGTCCAAGGCTCCTCGATTTGAAGCACATTCAAACCAGCAGTTTTGTCGTTATCTCTTCTACCTTGGGAAAATTCGGACAATTCAGCTGGAGTATACAGATGCAAAAGAGTCTCTCCTGCAGGCCGCCCGGAAAGCTCCTGTTGCTGCAAGGGGTTTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTCATGCAGAAAGGAATGGAGAAAGCTTTAAGGCCTTACTTTGAGCTTACAAATGCTGTGCGGATTGGAGACTTGGAACTGTTTAGGAATATTGCAGACAAGTTTGCCACTACCTTTAATGCAGACAGAACCCATAATTTGATTGTTCGTTTGCGGCATAATGTCATCAGGACTGGTTTACGCAACATCAGCATCTCCTATTCTCGCATCTCTCTAGCTGATGTTGCTAAAAAACTGAGGCTGAACTCTGCAAATCCTGTTGCAGATGCTGAGAGCATTGTATCAAAGGCTATTCGTGATGGTGCAATTGATGCTACATTGGATCATGCCAATGGTTGGATGGTGTCCAAAGAAACTGGAGATATTTACTCCACAAATGAGCCACAGTCAGCCTTCAATTCTCGGATTGCTTTCTGTCTTAACATGCACAATGAGGCGGTTCGAGCTCTTCGTTTTCCACCAAACACACACAAAGAGAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAGCTGGCTAAGCATATTGCAGAGGAGGATGACGATGATTTTTGA
Predicted protein sequences of Glyma.04g021500
>Glyma.04g021500.1.p sequence-type=predicted peptide transcript=Glyma.04g021500.1 locus=Glyma.04g021500 ID=Glyma.04g021500.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MTQDLEMRDRSTPSNSVSLPAPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLTASAISSFLDLVLTPGSEVHAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPELEIYCYLLVLLFLIDQKKYNEAKACSSASIVWLKNTNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRFATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFATTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSANPVADAESIVSKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQSAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF*






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