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Report for Sequence Feature Glyma.04g020600

Feature Type:gene_model
Chromosome:Gm04
Start:1625507
stop:1627333
Source:JGI
Version:Wm82.a2.v1
High confidence:yes



A previous version of this gene model can be found here:

Annotations for Glyma.04g020600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G20330.1AT sterol methyltransferase 2 JGI N/AIEA
GO:0006694GO-bp steroid biosynthetic process EnsemblGenomesN/AIEA
GO:0006694GO-bp steroid biosynthetic process JGI N/AIEA
GO:0008152GO-bp metabolic process EnsemblGenomesN/AIEA
GO:0008152GO-bp metabolic process JGI N/AIEA
GO:0008610GO-bp lipid biosynthetic process JGI N/AIEA
GO:0032259GO-bp methylation EnsemblGenomesN/AIEA
GO:0005737GO-cc cytoplasm EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity EnsemblGenomesN/AIEA
GO:0008168GO-mf methyltransferase activity JGI N/AIEA
GO:0008757GO-mf S-adenosylmethionine-dependent methyltransferase activity EnsemblGenomesN/AIEA
GO:0016740GO-mf transferase activity EnsemblGenomesN/AIEA
KOG1269 KOG SAM-dependent methyltransferases JGI N/AIEA
PTHR10108Panther METHYLTRANSFERASE JGI N/AIEA
PTHR10108:SF21Panther JGI N/AIEA
PF08241PFAM Methyltransferase domain JGI N/AIEA
PF08498PFAM Sterol methyltransferase C-terminal JGI N/AIEA
PWY-2541SoyCyc9 plant sterol biosynthesis Plant Metabolic Network ISS
PWY-6424SoyCyc9 26,27-dehydrozymosterol metabolism Plant Metabolic Network ISS
GN7V-53749SoyCyc9-rxn Enzyme name not determined Plant Metabolic Network ISS

Proteins Associated with Glyma.04g020600
LocusGene SymbolProtein Name
SMT2-1 sterol 24-C methyltransferase 2-1

Expression Patterns of Glyma.04g020600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma.04g020600 not represented in the dataset
Glyma.04g020600 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Related Legume Genes

View a gene family containing related genes from other legumes at LIS

Gene families from Phytozome are displayed using the PhyloTree viewer developed by LIS.


View gene and ortholog information at GlycineMine

Gene information in GlycineMine developed by LIS.


Related Plant Genes

View a gene family containing related genes from other plant species at PhyloGenes

Gene families from PhyloGenes.


Paralogs of Glyma.04g020600
ParalogEvidenceComments
Glyma.06g020700 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.35.

Gene model name correspondences to Glyma.04g020600 Gene Call Version Wm82.a2.v1
Corresponding NameAnnotation VersionEvidenceComments
Glyma04g02271 Wm82.a1.v1.1IGC As supplied by JGI


Coding sequences of Glyma.04g020600
>Glyma.04g020600.1 sequence-type=CDS polypeptide=Glyma.04g020600.1.p locus=Glyma.04g020600 ID=Glyma.04g020600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
ATGGACCCCCTCTCTCTCTTCTGCACCGGAGCCCTCCTCGCCGGCGGCCTCTACTGGTTCGTGTGCGTTCTGGGCCCCGCCGAGCAGAAGGGCAAACGCGCCACCGATCTTTCCGGCGGCTCCATCTCCGCCGAGAAAGTCCAAGACAACTACAAACAGTACTGGTCCTTCTTCCGCCGCCCAAAGGAGATCGAGACCGCCGACAAAGTCCCCGACTTCGTCGACACCTTCTACAATCTAGTCACAGACATCTACGAGTGGGGGTGGGGCCAGTCCTTCCACTTCTCCCCCTCCATCCCCGGCAAGTCCCACCGCGACGCCACGCGCCTCCACGAGGAGATGGCCGTCGATCTCATCGAGGCCAAGCCCGGCAACAGAATCCTGGATGTGGGCTGTGGCGTGGGCGGTCCCATGCGGGCCATCGCGGCCCACTCGCGGGCCAACGTAGTCGGCATCACCATCAACGAGTACCAGGTCAACCGCGCAAGGATGCACAACAAGAAGGCAGGGTTGGAGTCCCTCTGCGAGGTCGTGTGCGGGAATTTTCTCAAGATGCCCTTCCCCGACAACAGCTTCGACGGCGCGTACTCCATCGAGGCCACGTGTCACGCGCCGAAGCTGGAGGAAGTGTACGCCGAAATCTTCCGTGTTCTGAAACCGGGGGCGCTCTATGTTTCCTACGAGTGGGTGACGACGGATAAGTACCGAGGCGATGACCCTGAACACGTGGAGGTCATTCAGGGGATTGAGAGGGGGGACGCGTTGCCTGGCCTTAGAAACTACACCGACATAGCCGAGACGGCGCGTAAGGTAGGGTTTGCTGTTGTGAAGGAGCGGGATCTGGCTAAGCCGCCGGCTCAGCCATGGTGGAGCCGATTGAAGATGGGTAGGATCGCCTACTGGCGGAACCATATTGTGGTCACTGTTCTCGCCGCTTTGGGAATCGCGCCCAAGGGGACCGTCGATGTTCATGAGATGCTCTTCAAGACCGCTGACTATTTGACCAGAGGGGGTGACTCTGGCATTTTCTCGCCGATGCACATGATCCTCTGCAGAAAGCCCCATGACAAGGACGACCATAACTGA
Predicted protein sequences of Glyma.04g020600
>Glyma.04g020600.1.p sequence-type=predicted peptide transcript=Glyma.04g020600.1 locus=Glyma.04g020600 ID=Glyma.04g020600.1.Wm82.a2.v1 annot-version=Wm82.a2.v1
MDPLSLFCTGALLAGGLYWFVCVLGPAEQKGKRATDLSGGSISAEKVQDNYKQYWSFFRRPKEIETADKVPDFVDTFYNLVTDIYEWGWGQSFHFSPSIPGKSHRDATRLHEEMAVDLIEAKPGNRILDVGCGVGGPMRAIAAHSRANVVGITINEYQVNRARMHNKKAGLESLCEVVCGNFLKMPFPDNSFDGAYSIEATCHAPKLEEVYAEIFRVLKPGALYVSYEWVTTDKYRGDDPEHVEVIQGIERGDALPGLRNYTDIAETARKVGFAVVKERDLAKPPAQPWWSRLKMGRIAYWRNHIVVTVLAALGIAPKGTVDVHEMLFKTADYLTRGGDSGIFSPMHMILCRKPHDKDDHN*






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